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The Burrows–Wheeler transform (BWT, also called block-sorting compression) rearranges a character string into runs of similar characters. This is useful for compression, since it tends to be easy to compress a string that has runs of repeated characters by techniques such as move-to-front transform and run-length encoding.
The lexicographic order on the resulting sequences induces thus an order on the subsets, which is also called the lexicographical order. In this context, one generally prefer to sort first the subsets by cardinality, such as in the shortlex order. Therefore, in the following, we will consider only orders on subsets of fixed cardinal.
It is a lexicographically sorted array of all suffixes of each string in the set . In the array, each suffix is represented by an integer pair ( i , j ) {\displaystyle (i,j)} which denotes the suffix starting from position j {\displaystyle j} in s i {\displaystyle s_{i}} .
In mathematics, and particularly in the theory of formal languages, shortlex is a total ordering for finite sequences of objects that can themselves be totally ordered. In the shortlex ordering, sequences are primarily sorted by cardinality (length) with the shortest sequences first, and sequences of the same length are sorted into lexicographical order. [1]
Suffix arrays are closely related to suffix trees: . Suffix arrays can be constructed by performing a depth-first traversal of a suffix tree. The suffix array corresponds to the leaf-labels given in the order in which these are visited during the traversal, if edges are visited in the lexicographical order of their first character.
It stores the lengths of the longest common prefixes (LCPs) between all pairs of consecutive suffixes in a sorted suffix array. For example, if A := [ aab , ab , abaab , b , baab ] is a suffix array, the longest common prefix between A [1] = aab and A [2] = ab is a which has length 1, so H [2] = 1 in the LCP array H .
In mathematics, lexicographical order is a means of ordering sequences in a manner analogous to that used to produce alphabetical order. [16] Some computer applications use a version of alphabetical order that can be achieved using a very simple algorithm, based purely on the ASCII or Unicode codes for characters. This may have non-standard ...
Merge sort. In computer science, a sorting algorithm is an algorithm that puts elements of a list into an order.The most frequently used orders are numerical order and lexicographical order, and either ascending or descending.