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  2. List of open-source bioinformatics software - Wikipedia

    en.wikipedia.org/wiki/List_of_open-source...

    Open Chemistry Project: BEDtools "Genome arithmetic"—manipulation of coordinate sets and the extraction of sequences from a BED file. Linux: MIT: QuinlanLab, University of Utah: Bioclipse: Visual platform for chemo- and bioinformatics based on the Eclipse Rich Client Platform (RCP) Linux, macOS, Windows [1] Eclipse Public: The Bioclipse ...

  3. PHP Development Tools - Wikipedia

    en.wikipedia.org/wiki/PHP_Development_Tools

    The project intends to encompass all tools necessary to develop PHP based software. It uses the existing Eclipse Web Tools Project to provide developers with PHP capabilities. All these PHP tools are easy to use and developers can speed up the development process by using these tools. Additional plugins are available as PDT Extensions.

  4. List of sequence alignment software - Wikipedia

    en.wikipedia.org/wiki/List_of_sequence_alignment...

    It offers a solution to map NGS short reads with a moderate distance (up to 30% sequence divergence) from reference genomes. It poses no restrictions on the size of the reference, which, combined with its high sensitivity, makes the Variant Toolkit well-suited for targeted sequencing projects and diagnostics. Yes Yes Yes Yes Proprietary, commercial

  5. Capella (engineering) - Wikipedia

    en.wikipedia.org/wiki/Capella_(engineering)

    Capella was created by Thales in 2007, and has been under continuous development and evolution since then. The objective is to contribute to the transformation of engineering, providing an engineering environment which approach is based on models rather than focused on documents, piloted by a process, and offering, by construction, ways to ensure effective co-engineering.

  6. List of Unified Modeling Language tools - Wikipedia

    en.wikipedia.org/wiki/List_of_Unified_Modeling...

    Java, C++, C#, PHP MS Office, plantUML, Mermaid.js, miro, FreeMind, yUML and Redmine Mind Mapping, ER Diagram, DFD, Flowchart, CRUD, Traceability Map, Requirement Diagram and Requirement table. Provides API and Plugins, RTF, HTML Export. ATL: Yes No Yes No Un­known Un­known Available from the Eclipse M2M project (Model to Model).

  7. Keras - Wikipedia

    en.wikipedia.org/wiki/Keras

    "Keras 3 is a full rewrite of Keras [and can be used] as a low-level cross-framework language to develop custom components such as layers, models, or metrics that can be used in native workflows in JAX, TensorFlow, or PyTorch — with one codebase."

  8. Eclipse process framework - Wikipedia

    en.wikipedia.org/wiki/Eclipse_Process_Framework

    The Eclipse process framework (EPF) is an open source project that is managed by the Eclipse Foundation. It lies under the top-level Eclipse Technology Project , and has two goals: To provide an extensible framework and exemplary tools for software process engineering - method and process authoring, library management, configuring and ...

  9. Eclipse Theia - Wikipedia

    en.wikipedia.org/wiki/Eclipse_Theia

    Eclipse Theia is an Eclipse open source project providing the Theia Platform and the Theia IDE. The Eclipse Theia Platform is a free and open-source framework for building IDEs and tools based on web technologies. [3] Theia-based applications can be deployed as desktop and web applications. [4] It is implemented in TypeScript and emphasizes ...