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The idea of a tree of life arose from ancient notions of a ladder-like progression from lower into higher forms of life (such as in the Great Chain of Being).Early representations of "branching" phylogenetic trees include a "paleontological chart" showing the geological relationships among plants and animals in the book Elementary Geology, by Edward Hitchcock (first edition: 1840).
The Galton–Watson process is a branching stochastic process arising from Francis Galton's statistical investigation of the extinction of family names. [ 1 ] [ 2 ] The process models family names as patrilineal (passed from father to son), while offspring are randomly either male or female, and names become extinct if the family name line dies ...
Edward Hitchcock's fold-out paleontological chart in his 1840 Elementary Geology. Although tree-like diagrams have long been used to organise knowledge, and although branching diagrams known as claves ("keys") were omnipresent in eighteenth-century natural history, it appears that the earliest tree diagram of natural order was the 1801 "Arbre botanique" (Botanical Tree) of the French ...
Lineage (evolution) – Sequence of populations, organisms, cells, or genes that form a line of descent; Molecular phylogenetics – Branch of phylogeny that analyzes genetic, hereditary molecular differences; Most recent common ancestor – Most recent individual from which all organisms in a group are directly descended
A cladogram (from Greek clados "branch" and gramma "character") is a diagram used in cladistics to show relations among organisms. A cladogram is not, however, an evolutionary tree because it does not show how ancestors are related to descendants, nor does it show how much they have changed, so many differing evolutionary trees can be ...
A phylogenetic diagram can be rooted or unrooted. A rooted tree diagram indicates the hypothetical common ancestor of the tree. An unrooted tree diagram (a network) makes no assumption about the ancestral line, and does not show the origin or "root" of the taxa in question or the direction of inferred evolutionary transformations. [5]
Open-source tool for circular visualization with section and ring distortion and several other features such as branch clustering and pruning: All [32] TreeGraph 2 Open-source tree editor with numerous editing and formatting operations including combining different phylogenetic analyses: All [33] TreeView Treeviewing software: All [34] [35] UGENE
The most common formulation of a branching process is that of the Galton–Watson process.Let Z n denote the state in period n (often interpreted as the size of generation n), and let X n,i be a random variable denoting the number of direct successors of member i in period n, where X n,i are independent and identically distributed random variables over all n ∈{ 0, 1, 2, ...} and i ∈ {1 ...