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  2. Meep (software) - Wikipedia

    en.wikipedia.org/wiki/Meep_(software)

    The package was subsequently expanded to include an adjoint solver for topology optimization and inverse design, [3] and a Python interface. [4] The software is widely adopted by optics and photonics communities, [5] with applications including the analysis and design of metalenses [6] [7] and photonic crystals. [8] [9]

  3. List of phylogenetics software - Wikipedia

    en.wikipedia.org/wiki/List_of_phylogenetics_software

    This list of phylogenetics software is a compilation ... BIC, ultrafast bootstrapping, [24] branch tests, tree topology ... Free Phylogenetic Network Software: ...

  4. Olex2 - Wikipedia

    en.wikipedia.org/wiki/Olex2

    Olex [1] [2] and Olex2 [3] [4] are versatile software for crystallographic research. Olex used to be a research project developed during PhD to implement topological (as connectivity) analysis of polymeric chemical structures and still is widely used around the world. Olex2 is an open source project with the C++ code portable to Windows, Mac ...

  5. JTS Topology Suite - Wikipedia

    en.wikipedia.org/wiki/JTS_Topology_Suite

    JTS Topology Suite (Java Topology Suite) is an open-source Java software library that provides an object model for Euclidean planar linear geometry together with a set of fundamental geometric functions. JTS is primarily intended to be used as a core component of vector-based geomatics software such as geographical information systems. [2]

  6. List of open-source software for mathematics - Wikipedia

    en.wikipedia.org/wiki/List_of_open-source...

    This free software had an earlier incarnation, Macsyma. Developed by Massachusetts Institute of Technology in the 1960s, it was maintained by William Schelter from 1982 to 2001. In 1998, Schelter obtained permission to release Maxima as open-source software under the GNU General Public license and the source code was released later that year ...

  7. Comparison of software for molecular mechanics modeling

    en.wikipedia.org/wiki/Comparison_of_software_for...

    Proprietary, free academic use, source code Beckman Institute: NWChem: No No Yes Yes No No Yes No No High-performance computational chemistry software, includes quantum mechanics, molecular dynamics and combined QM-MM methods Free open source, Educational Community License version 2.0 NWChem: Protein Local Optimization Program: No Yes Yes Yes ...

  8. List of sequence alignment software - Wikipedia

    en.wikipedia.org/wiki/List_of_sequence_alignment...

    manual alignment ; some software assistance: Nucleotides: Local: J. Blandy and K. Fogel: 1994 (latest version 2007) Free, GPL2 ALLALIGN For DNA, RNA and protein molecules up to 32MB, aligns all sequences of size K or greater, MSA or within a single molecule. Similar alignments are grouped together for analysis. Automatic repetitive sequence ...

  9. Parasolid - Wikipedia

    en.wikipedia.org/wiki/Parasolid

    To use Parasolid effectively, software developers need knowledge of CAD in general, computational geometry, and topology. Parasolid is available for Windows ( 32-bit , 64-bit and AArch64 ), Linux (64-bit and AArch64), macOS (Intel and Apple silicon ), iOS , and Android .