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This is a list of commands from the GNU Core Utilities for Unix environments. These commands can be found on Unix operating systems and most Unix-like operating systems. GNU Core Utilities include basic file, shell and text manipulation utilities. Coreutils includes all of the basic command-line tools that are expected in a POSIX system.
The join command takes as input two text files and several options. If no command-line argument is given, this command looks for a pair of lines from the two files having the same first field (a sequence of characters that are different from space), and outputs a line composed of the first field followed by the rest of the two lines.
Comma-separated values (CSV) is a text file format that uses commas to separate values, and newlines to separate records. A CSV file stores tabular data (numbers and text) in plain text, where each line of the file typically represents one data record. Each record consists of the same number of fields, and these are separated by commas in the ...
This is a list of POSIX (Portable Operating System Interface) commands as specified by IEEE Std 1003.1-2024, which is part of the Single UNIX Specification (SUS). These commands can be found on Unix operating systems and most Unix-like operating systems.
PDFtk (short for PDF Toolkit) is a toolkit for manipulating Portable Document Format (PDF) documents. [3] [4] It runs on Linux, Windows and macOS. [5] It comes in three versions: PDFtk Server (open-source command-line tool), PDFtk Free and PDFtk Pro (proprietary paid). [2] It is able to concatenate, shuffle, split and rotate PDF files.
When it has completed its operation for the last file, paste will output a newline character and move on to the next line. paste exits after all streams return end of file. The number of lines in the output stream will equal the number of lines in the input file with the largest number of lines. Missing values are represented by empty strings.
For example, a table of 128 rows with a Boolean column requires 128 bytes a row-oriented format (one byte per Boolean) but 128 bits (16 bytes) in a column-oriented format (via a bitmap). Another example is the use of run-length encoding to encode a column.
Pileup format is a text-based format for summarizing the base calls of aligned reads to a reference sequence. This format facilitates visual display of SNP /indel calling and alignment. It was first used by Tony Cox and Zemin Ning at the Wellcome Trust Sanger Institute , and became widely known through its implementation within the SAMtools ...