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2. List of open-source bioinformatics software - Wikipedia

   en.wikipedia.org/wiki/List_of_open-source...

   Artistic, GPL. Open Bioinformatics Foundation. BioPHP. PHP language toolkit with classes for DNA and protein sequence analysis, alignment, database parsing, and other bioinformatics tools. Cross-platform. GPL v2. Open Bioinformatics Foundation. Biopython. Python language toolkit.

3. List of sequence alignment software - Wikipedia

   en.wikipedia.org/wiki/List_of_sequence_alignment...

   2006. MegAlign Pro (Lasergene Molecular Biology) Software to align DNA, RNA, protein, or DNA + protein sequences via pairwise and multiple sequence alignment algorithms including MUSCLE, Mauve, MAFFT, Clustal Omega, Jotun Hein, Wilbur-Lipman, Martinez Needleman-Wunsch, Lipman-Pearson and Dotplot analysis. Both.

4. BLAST (biotechnology) - Wikipedia

   en.wikipedia.org/wiki/BLAST_(biotechnology)

   BLAST (biotechnology) In bioinformatics, BLAST (basic local alignment search tool) [3] is an algorithm and program for comparing primary biological sequence information, such as the amino-acid sequences of proteins or the nucleotides of DNA and/or RNA sequences.

5. BLAST model checker - Wikipedia

   en.wikipedia.org/wiki/BLAST_model_checker

   The Berkeley Lazy Abstraction Software verification Tool ( BLAST) is a software model checking tool for C programs. The task addressed by BLAST is the need to check whether software satisfies the behavioral requirements of its associated interfaces. BLAST employs counterexample -driven automatic abstraction refinement to construct an abstract ...

6. List of alignment visualization software - Wikipedia

   en.wikipedia.org/wiki/List_of_alignment...

   Software is package of 7 interactive visual tools for multiple sequence alignments. Major focus is manipulating large alignments. Includes MSApad, MSA comparator, MSA reconstruction tool, FASTA generator and MSA ID matrix calculator. Clustal W, MSF, PHYLIP, PIR, GDE, Nexus. Proprietary, freeware.

7. Bowtie (sequence analysis) - Wikipedia

   en.wikipedia.org/wiki/Bowtie_(sequence_analysis)

   Bowtie (sequence analysis) Bowtie is a software package commonly used for sequence alignment and sequence analysis in bioinformatics. [3] The source code for the package is distributed freely and compiled binaries are available for Linux, macOS and Windows platforms. As of 2017, the Genome Biology paper describing the original Bowtie method has ...