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PICRUSt [1] is a bioinformatics software package. The name is an abbreviation for Phylogenetic Investigation of Communities by Reconstruction of Unobserved States.. The tool serves in the field of metagenomic analysis where it allows inference of the functional profile of a microbial community based on marker gene survey along one or more samples.
T-RFLP Analysis (APLAUS+): Another ‚‘in-silico‘‘ assignment tool on the website of the Microbial Community Analysis project at the University of Idaho: BEsTRF: a tool for optimal resolution of terminal restriction fragment length polymorphism analysis based on user defined primer-enzyme-sequence databases
Metatranscriptomics is the set of techniques used to study gene expression of microbes within natural environments, i.e., the metatranscriptome. [1]While metagenomics focuses on studying the genomic content and on identifying which microbes are present within a community, metatranscriptomics can be used to study the diversity of the active genes within such community, to quantify their ...
PAST includes functions for data management, data visualisation through graphics, univariate and multivariate analysis procedures as well as linear and non-linear modelling. There are also functions for diversity calculation, time series analysis, geostatistical and stratigraphic analysis. [3] The operation is basically mouse-controlled.
Effective microorganisms enhance the soil's beneficial microbial community, paving the way for sustainable agriculture. These microorganisms consist of naturally occurring microbes, such as photosynthesizing bacteria, lactic acid bacteria, yeasts, and fermenting fungi, which can be applied to increase soil microbial diversity.
This is a list of free and open-source software for geological data handling and interpretation. The list is split into broad categories, depending on the intended use of the software and its scope of functionality. Notice that 'free and open-source' requires that the source code is available and users are given a free software license.
The Integrated Microbial Genomes system is a genome browsing and annotation platform developed by the U.S. Department of Energy (DOE)-Joint Genome Institute. [2] [3] IMG contains all the draft and complete microbial genomes sequenced by the DOE-JGI integrated with other publicly available genomes (including Archaea, Bacteria, Eukarya, Viruses and Plasmids).
[7] [8] [9] Microorganisms (soil microbes) are involved in biogeochemical cycles in the soil which helps in fixing nutrients, such as nitrogen, phosphorus and sulphur in the soil (environment). [10] As a consequence of the quantitative magnitude of microbial life (calculated as 5.0 × 10 30 cells, [ 11 ] [ 12 ] ) microbes, by virtue of their ...