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Jmol is computer software for molecular modelling of chemical structures in 3 dimensions. [2] It is an open-source Java viewer for chemical structures in 3D [ 3 ] . The name originated from [ J ]ava (the programming language) + [mol]ecules, and also the mol file format .
Use of Jmol in Wiki pages is available for several wikis (see Jmol-Wiki extensions), and contributions have been made by several people. NicoV has completed work on the second version of the Jmol extension adding support for Jmol in MediaWiki. This uses two PHP files rather than the one used in the initial implementation.
This is a list of notable software systems that are used for visualizing macromolecules. [1] ... Jmol: Free open-source: Java ... limited free version
UCSF Chimera (or simply Chimera) is an extensible program for interactive visualization and analysis of molecular structures and related data, including density maps, supramolecular assemblies, sequence alignments, docking results, trajectories, and conformational ensembles. [1]
Jmol extension is really useful --Pansanel 07:49, 11 April 2006 (UTC) Many molecular structures are difficult to handle in 2D sketch. A 3D visualization software is great for this job. For example, calixarene derivatives have a cone shape. Such molecule can really better understand with a 3D interactive tool.
Jmol is an open-source Java-based viewer for browsing molecular structures on the web; it includes a simplified "cartoon" version of ribbons. Other graphics programs such as DeepView (example: urease ) and MolMol (example: SH2 domain ) also produce ribbon images.
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In analogy to JME, the JavaScript version is named JSME. Its interface is almost identical to that of JME, [2] although some cosmetic options are available. [3] It is released as free and open-source software under a 3-clause BSD license in the form of minified JavaScript produced by GWT.