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  2. List of open-source bioinformatics software - Wikipedia

    en.wikipedia.org/wiki/List_of_open-source...

    Software Description Platform License Developer .NET Bio Language-neutral toolkit built using the Microsoft 4.0 .NET Framework to help developers, researchers, and scientists .NET Framework: Apache: Collaborative project AMPHORA: Metagenomics analysis software Linux: GPL: Jonathan Eisen: Anduril: Component-based workflow framework for data analysis

  3. Bioconductor - Wikipedia

    en.wikipedia.org/wiki/Bioconductor

    Bioconductor is a free, open source and open development software project for the analysis and comprehension of genomic data generated by wet lab experiments in molecular biology. Bioconductor is based primarily on the statistical R programming language , but does contain contributions in other programming languages.

  4. List of phylogenetics software - Wikipedia

    en.wikipedia.org/wiki/List_of_phylogenetics_software

    ADMIXTOOLS [1] R software package that contains the qpGraph, qpAdm, qpWave, and qpDstat programs Nick Patterson, David Reich: AncesTree [2] An algorithm for clonal tree reconstruction from multi-sample cancer sequencing data. Maximum Likelihood, Integer Linear Programming (ILP) M. El-Kebir, L. Oesper, H. Acheson-Field, B. J. Raphael AliGROOVE [3]

  5. List of systems biology modeling software - Wikipedia

    en.wikipedia.org/wiki/List_of_systems_biology...

    This table is edited from a version that was originally published in the Encyclopedia of Computational Neuroscience. [48] System boundaries codes: R = reflecting, A = absorbing, T = transmitting, P = periodic, and I = interacting. * Algorithm is exact but software produced incorrect results at the time of original table compilation.

  6. List of systems biology visualization software - Wikipedia

    en.wikipedia.org/wiki/List_of_systems_biology...

    free, online, open-source, phylogenetic analysis, drawing dendrograms etc. REACTOME free, online, open-source, curated pathway database encompassing many areas of human biology WikiPathways: curate biological pathways MetaboMAPS: visualize omics data on shared metabolic pathways [1]

  7. Molecular Evolutionary Genetics Analysis - Wikipedia

    en.wikipedia.org/wiki/Molecular_Evolutionary...

    These tests are commonly used for analytical formulas or bootstrapping resampling in MEGA. [31] Fisher's exact test — Fisher's Exact Test examines synonymous and nonsynonymous substitutions in sequences and is referred to as a one-tailed test when analyzing small samples for positive selection. Rejecting the null hypothesis of neutrality ...

  8. LibreTexts - Wikipedia

    en.wikipedia.org/wiki/LibreTexts

    LibreTexts' current primary support is from the 2018 Open Textbook Pilot Program award from the Department of Education Organization Act. [7] [10] [5] [11] FIPSE [12] Other funding comes from the University of California Davis, the University of California Davis Library, [5] and the California State University System both through MERLOT and its Affordable Learning Solutions (AL$) program.

  9. Biological data visualization - Wikipedia

    en.wikipedia.org/wiki/Biological_data_visualization

    [9] To visualize sequence alignments and their features, researchers often rely on popular bioinformatics software tools such as Clustal Omega, MUSCLE, T-Coffee, and MAFFT. These tools provide interactive platforms for aligning sequences, highlighting conserved regions, displaying sequence variations, and identifying sequence motifs.

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