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Soil microbiology is the study of microorganisms in soil, their functions, and how they affect soil properties. [1] It is believed that between two and four billion years ago, the first ancient bacteria and microorganisms came about on Earth's oceans.
The microbial communities inside the root and in the rhizosphere are distinct from each other, [2] and from the microbial communities of bulk soil, [3] although there is some overlap in species composition. Different microorganisms, both beneficial and harmful, affect the development and physiology of plants.
Soil health is a state of a soil meeting its range of ecosystem functions as appropriate to its environment. In more colloquial terms, the health of soil arises from favorable interactions of all soil components (living and non-living) that belong together, as in microbiota , plants and animals.
Free-living microfungi often function as decomposers, and contribute to soil microbial biomass. Many microfungi in biological soil crusts have adapted to the intense light conditions by evolving the ability to produce melanin, and are called black fungi or black yeasts. Fungal hyphae can bind soil particles together.
Without soil fauna, microbes that directly prey upon competitors of plants, and plant mutualists, interactions within the rhizosphere would be antagonistic toward the plants. Soil fauna provides the rhizosphere's top-down component while allowing for the bottom-up increase in nutrients from rhizodeposition and inorganic nitrogen.
Soil biology is the study of microbial and faunal activity and ecology in soil. Soil life, soil biota, soil fauna, or edaphon is a collective term that encompasses all organisms that spend a significant portion of their life cycle within a soil profile, or at the soil-litter interface.
Soil microbial communities experience shifts in the diversity and composition during dehydration and rehydration cycles. [5] Soil moisture affects carbon cycling a phenomenon known as Birch effect. [6] [7] Temperature variations in soil are influenced by factors such as seasonality, environmental conditions, vegetation, and soil composition.
Soil microbial communities are characterized in many different ways. The activity of microbes can be measured by their respiration and carbon dioxide release. The cellular components of microbes can be extracted from soil and genetically profiled, or microbial biomass can be calculated by weighing the soil before and after fumigation.