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The distance matrix is widely used in the bioinformatics field, and it is present in several methods, algorithms and programs. Distance matrices are used to represent protein structures in a coordinate-independent manner, as well as the pairwise distances between two sequences in sequence space.
In mathematics, a Euclidean distance matrix is an n×n matrix representing the spacing of a set of n points in Euclidean space. For points x 1 , x 2 , … , x n {\displaystyle x_{1},x_{2},\ldots ,x_{n}} in k -dimensional space ℝ k , the elements of their Euclidean distance matrix A are given by squares of distances between them.
In quantum mechanics, and especially quantum information and the study of open quantum systems, the trace distance T is a metric on the space of density matrices and gives a measure of the distinguishability between two states. It is the quantum generalization of the Kolmogorov distance for classical probability distributions.
In the mathematical field of graph theory, the distance between two vertices in a graph is the number of edges in a shortest path (also called a graph geodesic) connecting them. This is also known as the geodesic distance or shortest-path distance. [1] Notice that there may be more than one shortest path between two vertices. [2]
Edit distance matrix for two words using cost of substitution as 1 and cost of deletion or insertion as 0.5. For example, the Levenshtein distance between "kitten" and "sitting" is 3, since the following 3 edits change one into the other, and there is no way to do it with fewer than 3 edits: kitten → sitten (substitution of "s" for "k"),
Wasserstein metrics measure the distance between two measures on the same metric space. The Wasserstein distance between two measures is, roughly speaking, the cost of transporting one to the other. The set of all m by n matrices over some field is a metric space with respect to the rank distance (,) = ().
One first computes the distance correlation (involving the re-centering of Euclidean distance matrices) between two random vectors, and then compares this value to the distance correlations of many shuffles of the data. Several sets of (x, y) points, with the distance correlation coefficient of x and y for each set.
In statistics, Gower's distance between two mixed-type objects is a similarity measure that can handle different types of data within the same dataset and is particularly useful in cluster analysis or other multivariate statistical techniques. Data can be binary, ordinal, or continuous variables.