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This page is a subsection of the list of sequence alignment software. Multiple alignment visualization tools typically serve four purposes: Aid general understanding of large-scale DNA or protein alignments; Visualize alignments for figures and publication; Manually edit and curate automatically generated alignments; Analysis in depth
Multiple alignment methods try to align all the sequences in each query set. Multiple alignments are often used in identifying conserved sequence regions across a group of sequences hypothesized to be evolutionarily related. Purposes of Alignment Visualization: Aid general understanding of large-scale DNA or protein alignments.
Multiple alignment and secondary structure prediction: RNA: Local or global: I. Holmes: 2005: Free, GPL 3 (parte de DART) T-Coffee: More sensitive progressive alignment: Both: Local or global: C. Notredame et al. 2000 (newest version 2008) Free, GPL 2 UGENE: Supports multiple alignment with MUSCLE, KAlign, Clustal and MAFFT plugins: Both: Local ...
Family of software to create, view, store and share knowledge structures: SmartDraw: SmartDraw Software, LLC Windows: Visual processor used to create flowcharts, organization charts, mind maps, gantt charts and other visuals: SpicyNodes: IDEA.org: Adobe Flash: Radial maps, viewer can move from node to node: Tinderbox: Eastgate Systems: OS X
Michel C. Milinkovitch and Raphaël Helaers MicrobeTrace: MicrobeTrace is a free, browser-based web application. 2D and 3D network visualization tool, Neighbor-joining tree visualization, Gantt charts, bubbles charts, networks visualized on maps, flow diagrams, aggregate tables, epi curves, histograms, alignment viewer, and much more.
A multivalent browser for sequence alignment, phylogeny, and structure. Performs an interactive Evolutionary Trace [25] and other phylogeny-inspired analysis. All [26] MEGA: Software for statistical analysis of molecular evolution. It includes different tree visualization features All [27] MultiDendrograms
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TeeChart is a charting library for programmers, developed and managed by Steema Software of Girona, Catalonia, Spain. [1] It is available as commercial and non-commercial software. TeeChart has been included in most Delphi and C++Builder products since 1997, [ 2 ] and TeeChart Standard currently is part of Embarcadero RAD Studio 12 Athens. [ 3 ]