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This page is a subsection of the list of sequence alignment software. Multiple alignment visualization tools typically serve four purposes: Aid general understanding of large-scale DNA or protein alignments; Visualize alignments for figures and publication; Manually edit and curate automatically generated alignments; Analysis in depth
Michel C. Milinkovitch and Raphaël Helaers MicrobeTrace: MicrobeTrace is a free, browser-based web application. 2D and 3D network visualization tool, Neighbor-joining tree visualization, Gantt charts, bubbles charts, networks visualized on maps, flow diagrams, aggregate tables, epi curves, histograms, alignment viewer, and much more.
Multiple alignment and secondary structure prediction: RNA: Local or global: I. Holmes: 2005: Free, GPL 3 (parte de DART) T-Coffee: More sensitive progressive alignment: Both: Local or global: C. Notredame et al. 2000 (newest version 2008) Free, GPL 2 UGENE: Supports multiple alignment with MUSCLE, KAlign, Clustal and MAFFT plugins: Both: Local ...
Combinatorial Extension-Monte Carlo: Cα: Multi: No: server: C. Guda: 2004 DaliLite: Distance Matrix Alignment: C-Map: Pair: No: server and download: L. Holm: 1993 TM-align TM-score based protein structure alignment: Cα: Pair: nil: server and download: Y. Zhang & J. Skolnick: 2005 mTM-align Multiple protein structure alignment based on TM ...
Lite for .NET [4] is a free charting component for the Microsoft Visual Studio .NET community and TeeChart for PHP [5] is an open-source library for PHP environments. The TeeChart Charting Library offers charts, maps and gauges [6] in versions for Delphi VCL/FMX, ActiveX, C# for Microsoft Visual Studio .NET, Java and PHP.
Component-based data mining and machine learning software suite written in C++, featuring a visual programming front-end for exploratory data analysis and interactive visualization, and Python bindings and libraries for scripting Linux, macOS, Windows: GPL: University of Ljubljana: SAMtools
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Users can also create, share, download, and preview stencils online as well through OmniGraffle's Stenciltown [6] or other stencil libraries, such as Graffletopia. [7] OmniGraffle documents are vectorial, and the app includes vector design tools. OmniGraffle supports "smart guides" and snap-to-grid for object alignment.