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  2. TRANSFAC - Wikipedia

    en.wikipedia.org/wiki/TRANSFAC

    The target sequences and the regulated genes can be listed for each TF, which can be used as benchmark for TFBS recognition tools or as training sets for new transcription factor binding sites (TFBS) recognition algorithms. [12] The TF classification enables to analyze such data sets with regard to the properties of the DNA-binding domains. [13]

  3. Transcription factor binding site databases - Wikipedia

    en.wikipedia.org/wiki/Transcription_factor...

    a Wiki-based database for transcription factor-binding data generated by the ENCODE consortium. database: website [8] hmChIP a database and web server for exploring publicly available human and mouse ChIP-seq and ChIP-chip data. database: website [9] HOCOMOCO: a comprehensive collection of human and mouse transcription factor binding sites ...

  4. List of chemical databases - Wikipedia

    en.wikipedia.org/wiki/List_of_chemical_databases

    Therapeutic Targets Database Zhejiang University: drugs and targets SMILES InChI CAS PubChem "TTD". 37,316 T3DB Toxin and Toxin-Target Database Toxic Exposome Database. University of Alberta: toxins and toxin targets T3D "T3DB". 3,678 UniChem EMBL-EBI pointers to existing chemicals; indexes 41 databases [12] Structure; StdInChI; links to databases

  5. Therapeutic Targets Database - Wikipedia

    en.wikipedia.org/wiki/Therapeutic_Targets_Database

    Target validation normally requires the determination that the target is expressed in the disease-relevant cells/tissues, [6] it can be directly modulated by a drug or drug-like molecule with adequate potency in biochemical assay, [7] and that target modulation in cell and/or animal models ameliorates the relevant disease phenotype. [8]

  6. Transcription factor - Wikipedia

    en.wikipedia.org/wiki/Transcription_factor

    In molecular biology, a transcription factor (TF) (or sequence-specific DNA-binding factor) is a protein that controls the rate of transcription of genetic information from DNA to messenger RNA, by binding to a specific DNA sequence.

  7. ETS transcription factor family - Wikipedia

    en.wikipedia.org/wiki/ETS_transcription_factor...

    All ETS (Erythroblast Transformation Specific) family members are identified through a highly conserved DNA binding domain, the ETS domain, which is a winged helix-turn-helix structure that binds to DNA sites with a central GGA(A/T) DNA sequence.

  8. Transcription factor II F - Wikipedia

    en.wikipedia.org/wiki/Transcription_Factor_II_F

    TF II F is encoded by the GTF2F1, GTF2F2, and GTF2F2L genes. [4] [5] [6] TF II F binds to RNA polymerase II when the enzyme is already unbound to any other transcription factor, thus preventing it from contacting DNA outside the promoter. Furthermore, TF II F stabilizes the RNA polymerase II while it's contacting TBP and TF II B.

  9. AnimalTFDB - Wikipedia

    en.wikipedia.org/wiki/AnimalTFDB

    AnimalTFDB; Content; Description: animal transcription factor database.: Contact; Research center: Huazhong University of Science and Technology: Laboratory: Hubei Bioinformatics & Molecular Imaging Key Laboratory