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2. CRAM (file format) - Wikipedia

   en.wikipedia.org/wiki/CRAM_(file_format)

   The basic structure of a CRAM file is a series of containers, the first of which holds a compressed copy of the SAM header. Subsequent containers consist of a container Compression Header followed by a series of slices which in turn hold the alignment records themselves, formatted as a series of blocks.

3. SAMtools - Wikipedia

   en.wikipedia.org/wiki/SAMtools

   Input is usually a sam or bam file specified as an argument, but could be sam or bam data piped from any other command. Possible uses include extracting a subset of data into a new file, converting between BAM and SAM formats, and just looking at the raw file contents. The order of extracted reads is preserved. sort

4. SAM (file format) - Wikipedia

   en.wikipedia.org/wiki/SAM_(file_format)

   The SAM format consists of a header and an alignment section. [1] The binary equivalent of a SAM file is a Binary Alignment Map (BAM) file, which stores the same data in a compressed binary representation. [4] SAM files can be analysed and edited with the software SAMtools. [1] The header section must be prior to the alignment section if it is ...

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   en.wikipedia.org/wiki/Smallpdf.com

   Smallpdf is a Swiss online web-based PDF software, founded in 2013. [2] It offers free version with limited features to compress, convert and edit PDF documents. [3] And its paid version offers advanced features like OCR, compress, and more [4].

7. Binary Alignment Map - Wikipedia

   en.wikipedia.org/wiki/Binary_Alignment_Map

   Binary Alignment Map (BAM) is the comprehensive raw data of genome sequencing; [1] it consists of the lossless, compressed binary representation of the Sequence Alignment Map-files. [2] [3] BAM is the compressed binary representation of SAM (Sequence Alignment Map), a compact and index-able representation of nucleotide sequence alignments. [4]

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