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  2. List of biological databases - Wikipedia

    en.wikipedia.org/wiki/List_of_biological_databases

    It links gene information to phenotypic information from microbial pathogens on their hosts. Information is manually curated from peer-reviewed literature. RGD Rat Genome Database: genomic and phenotype data for Rattus norvegicus; PomBase database: manually curated phenotypic data for the yeast Schizosaccharomyces pombe

  3. List of chemical databases - Wikipedia

    en.wikipedia.org/wiki/List_of_chemical_databases

    unified namespace for metabolites and biochemical reactions in the context of metabolic models "MetaNetX". 240 metabolic models, 1292154 metabolites, 74613 reactions, 44 compartments METLIN: Metabolite and Chemical Entity Database tandem mass spectrometry of metabolites "METLIN". 960,000 MINAS: Metal Ions in Nucleic AcidS University of Zurich

  4. Human Metabolome Database - Wikipedia

    en.wikipedia.org/wiki/Human_Metabolome_Database

    Human Metabolome Database; Content; Description: Metabolomics database: Data types captured: Human metabolite structures, metabolite descriptions, metabolite reactions, metabolite enzymes and transporters, human enzyme and transporter sequences, human metabolic pathways, normal and abnormal metabolite concentrations in humans, associated diseases, chemical properties, nomenclature, synonyms ...

  5. Metabolome - Wikipedia

    en.wikipedia.org/wiki/Metabolome

    According to their data, the human serum metabolome contains at least 4,200 different compounds (including many lipids), the human urine metabolome contains at least 3,000 different compounds (including hundreds of volatiles and gut microbial metabolites), the human CSF metabolome contains nearly 500 different compounds while the human saliva ...

  6. MicrobesOnline - Wikipedia

    en.wikipedia.org/wiki/MicrobesOnline

    Microme: a platform that integrates a database, tools and browsers for studying bacterial metabolism. MBGD: Microbial Genome Database for Comparative Analysis; Virtual Institute for Microbial Stress and Survival (VIMSS): the supporter for an integrated program to study how microbes respond to and survive environmental stresses.

  7. Microbial metabolism - Wikipedia

    en.wikipedia.org/wiki/Microbial_metabolism

    Microbial metabolism is the means by which a microbe obtains the energy and nutrients (e.g. carbon) it needs to live and reproduce.Microbes use many different types of metabolic strategies and species can often be differentiated from each other based on metabolic characteristics.

  8. Metabolomics - Wikipedia

    en.wikipedia.org/wiki/Metabolomics

    The database is designed to contain or link three kinds of data: Chemical data, Clinical data and; Molecular biology/biochemistry data. The database contains 220,945 metabolite entries including both water-soluble and lipid soluble metabolites. Additionally, 8,610 protein sequences (enzymes and transporters) are linked to these metabolite entries.

  9. E. Coli Metabolome Database - Wikipedia

    en.wikipedia.org/wiki/E._Coli_Metabolome_Database

    The E. coli Metabolome Database (ECMDB) [1] is a freely accessible, online database of small molecule metabolites found in or produced by Escherichia coli (E. coli strain K12, MG1655). Escherichia coli is perhaps the best studied bacterium on earth and has served as the "model microbe" in microbiology research for more than 60 years.