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The core Anduril engine is written in Java and components are written in a variety of programming languages, including Java, R, MATLAB, Lua, Perl and Python. Components may also have dependencies on third-party libraries, such as Bioconductor. Components for cell imaging and microarray analysis are provided but additional components can be ...
Diffusion maps exploit the relationship between heat diffusion and random walk Markov chain.The basic observation is that if we take a random walk on the data, walking to a nearby data-point is more likely than walking to another that is far away.
Whitening a data matrix follows the same transformation as for random variables. An empirical whitening transform is obtained by estimating the covariance (e.g. by maximum likelihood) and subsequently constructing a corresponding estimated whitening matrix (e.g. by Cholesky decomposition).
fastqp Simple FASTQ quality assessment using Python. Kraken: [9] A set of tools for quality control and analysis of high-throughput sequence data. HTSeq [10] The Python script htseq-qa takes a file with sequencing reads (either raw or aligned reads) and produces a PDF file with useful plots to assess the technical quality of a run.
is the negative normalized second derivative of a Gaussian function, i.e., up to scale and normalization, the second Hermite function. It is a special case of the family of continuous wavelets (wavelets used in a continuous wavelet transform) known as Hermitian wavelets. The Ricker wavelet is frequently employed to model seismic data, and as a ...
The probability density function for the random matrix X (n × p) that follows the matrix normal distribution , (,,) has the form: (,,) = ([() ()]) / | | / | | /where denotes trace and M is n × p, U is n × n and V is p × p, and the density is understood as the probability density function with respect to the standard Lebesgue measure in , i.e.: the measure corresponding to integration ...
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Let A be a square matrix. Then by Schur decomposition it is unitary similar to an upper-triangular matrix, say, B. If A is normal, so is B. But then B must be diagonal, for, as noted above, a normal upper-triangular matrix is diagonal. The spectral theorem permits the classification of normal matrices in terms of their spectra, for example: