enow.com Web Search

Search results

  1. Results from the WOW.Com Content Network
  2. GeneMark - Wikipedia

    en.wikipedia.org/wiki/GeneMark

    GeneMark is a generic name for a family of ab initio gene prediction algorithms and software programs developed at the Georgia Institute of Technology in Atlanta.Developed in 1993, original GeneMark was used in 1995 as a primary gene prediction tool for annotation of the first completely sequenced bacterial genome of Haemophilus influenzae, and in 1996 for the first archaeal genome of ...

  3. List of gene prediction software - Wikipedia

    en.wikipedia.org/wiki/List_of_gene_prediction...

    Automated software package to annotate eukaryotic genes from RNA-Seq data and associated protein sequences Eukaryotes [1] FragGeneScan: Predicting genes in complete genomes and sequencing Reads: Prokaryotes, Metagenomes [2] ATGpr: Identifies translational initiation sites in cDNA sequences: Human [3] Prodigal

  4. DNA annotation - Wikipedia

    en.wikipedia.org/wiki/DNA_annotation

    Generalized flowchart of a structural genome annotation pipeline. First, the repetitive regions of an assembled genome are masked by using a repeat library. Then, optionally, the masked sequence is aligned with all the available evidence (ESTs, RNAs, and proteins) of the organism being annotated.

  5. Gene prediction - Wikipedia

    en.wikipedia.org/wiki/Gene_prediction

    Ab Initio gene prediction is an intrinsic method based on gene content and signal detection. Because of the inherent expense and difficulty in obtaining extrinsic evidence for many genes, it is also necessary to resort to ab initio gene finding, in which the genomic DNA sequence alone is systematically searched for certain tell-tale signs of protein-coding genes.

  6. RefSeq - Wikipedia

    en.wikipedia.org/wiki/RefSeq

    MANE (Matched Annotation from the NCBI and EMBL-EBI): It is a collaborative project between NCBI and EMBL-EBI whose main goal is to define a set of transcripts and their proteins for all the protein-coding genes in the human genome. By doing that, the differences in transcripts annotation between RefSeq and Ensembl/GENCODE annotation systems ...

  7. TIGRFAMs - Wikipedia

    en.wikipedia.org/wiki/TIGRFAMs

    TIGRFAMs is a database of protein families designed to support manual and automated genome annotation. [1] [2] [3] Each entry includes a multiple sequence alignment and hidden Markov model (HMM) built from the alignment. Sequences that score above the defined cutoffs of a given TIGRFAMs HMM are assigned to that protein family and may be ...

  8. List of sequence alignment software - Wikipedia

    en.wikipedia.org/wiki/List_of_sequence_alignment...

    Quantify and manage large quantities of short-read sequence data. CASHX pipeline contains a set of tools that can be used together, or separately as modules. This algorithm is very accurate for perfect hits to a reference genome. No Proprietary, freeware for academic and noncommercial use Cloudburst Short-read mapping using Hadoop MapReduce

  9. Genomic annotation - Wikipedia

    en.wikipedia.org/wiki/Genomic_annotation

    Genomic annotation can refer to: DNA annotation; SNP annotation; See also. Vertebrate Genome Annotation Project This page was last edited on 16 ...