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GenMAPP (Gene Map Annotator and Pathway Profiler) is a free, open-source bioinformatics software tool designed to visualize and analyze genomic data in the context of pathways (metabolic, signaling), connecting gene-level datasets to biological processes and disease. [1]
There are two distinctive mapping approaches used in the field of genome mapping: genetic maps (also known as linkage maps) [7] and physical maps. [3] While both maps are a collection of genetic markers and gene loci, [8] genetic maps' distances are based on the genetic linkage information, while physical maps use actual physical distances usually measured in number of base pairs.
This page is a subsection of the list of sequence alignment software.. Multiple alignment visualization tools typically serve four purposes: Aid general understanding of large-scale DNA or protein alignments
Computation of gene and species trees based on event-relations (orthology, paralogy) Cograph-Editing and Triple-Inference: Hellmuth PartitionFinder Combined selection of models of molecular evolution and partitioning schemes for DNA and protein alignments: Maximum likelihood, AIC, AICc, BIC: R. Lanfear, B Calcott, SYW Ho, S Guindon PASTIS
GOSeq [151] Gene Ontology analyser for RNA-seq and other length biased data. GSAASEQSP [152] A Toolset for Gene Set Association Analysis of RNA-Seq Data. GSVA [153] gene set variation analysis for microarray and RNA-Seq data. Heat*Seq an interactive web tool for high-throughput sequencing experiment comparison with public data.
Gene Designer is a computer software package for bioinformatics. [ 1 ] [ 2 ] It is used by molecular biologists from academia, government, and the pharmaceutical, chemical, agricultural, and biotechnology industries to design, [ 3 ] clone, and validate genetic sequences.
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Link, visualise and explore sequence and meta-data using phylogenetic trees, maps and timelines OneZoom [8] uses IFIG (Interactive Fractal Inspired Graphs) to display phylogenetic trees which can be zoomed in on to increase detail Lifemap [9] Fractal-like representation to provide an interactive explorer of the tree of life "à la google maps"