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MicroDicom is a free DICOM viewer and editor for Windows. It can open DICOM images produced by medical equipment (MRI, PET, CT, ...). It can also possible to open other image formats - BMP, GIF, JPEG, PNG, TIFF, etc. It has also been used by the U.S. Department of Veterans' Affairs to get medical data on their state of health. [3]
Neuroimaging software is used to study the structure and function of the brain. To see an NIH Blueprint for Neuroscience Research funded clearinghouse of many of these software applications, as well as hardware, etc. go to the NITRC web site. 3D Slicer Extensible, free open source multi-purpose software for visualization and analysis.
Mango (Multi-Image Analysis GUI) is a non-commercial software for viewing, editing and analyzing volumetric medical images. Mango is written in Java, and distributed freely in precompiled versions for Linux, Mac OS and Microsoft Windows. It supports NIfTI, ANALYZE, NEMA and DICOM formats and is able to load and save 2D, 3D and 4D images.
Analysis of Functional NeuroImages (AFNI) is an open-source environment for processing and displaying functional MRI data—a technique for mapping human brain activity.. AFNI is an agglomeration of programs that can be used interactively or flexibly assembled for batch processing using shell script.
OsiriX 7.5 - Dark Mode and vessel tracking (centreline) [8] OsiriX 8.5 - DICOMweb protocol support [9] OsiriX 9.0 - Smart Display (adjust image scaling to image content) [10] OsiriX 9.5 - Javascript web viewer for the built-in Web Portal functionality [11] OsiriX 12.0 - Compiled for Apple Silicon processors (M1, M2, …) [12]
The FMRIB Software Library, abbreviated FSL, is a software library containing image analysis and statistical tools for functional, structural and diffusion MRI brain imaging data. FSL is available as both precompiled binaries and source code for Apple and PC computers. It is freely available for non-commercial use.
FreeSurfer interoperates easily with the FMRIB Software Library (FSL), a comprehensive library for image analysis written by the Functional MRI of the Brain (FMRIB) group at Oxford, UK. The functional activation results obtained using either the FreeSurfer Functional Analysis Stream (FS-FAST) or the FSL tools can be overlaid onto inflated ...
CONN includes a user-friendly GUI to manage all aspects of functional connectivity analyses, [1] including preprocessing of functional and anatomical volumes, [2] elimination of subject-movement and physiological noise, [3] outlier scrubbing, [4] estimation of multiple connectivity and network measures, and population-level hypothesis testing.