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Jmol is computer software for molecular modelling of chemical structures in 3 dimensions. [2] It is an open-source Java viewer for chemical structures in 3D . [ 3 ] The name originated from [ J ]ava (the programming language) + [mol]ecules, and also the mol file format .
To display molecules with Jmol, your browser needs to be Java enabled. Two examples of Jmol images in a wiki are here and here. These use Jmol to show medium sized molecules with buttons to control the rotation of the molecules. The right mouse button opens a Jmol menu while the left mouse button can be used to move the image.
Jmol extension is really useful --Pansanel 07:49, 11 April 2006 (UTC) Many molecular structures are difficult to handle in 2D sketch. A 3D visualization software is great for this job. For example, calixarene derivatives have a cone shape. Such molecule can really better understand with a 3D interactive tool.
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An image viewer or image browser is a computer program that can display stored graphical images; it can often handle various graphics file formats. [1] Such software usually renders the image according to properties of the display such as color depth , display resolution , and color profile .
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UCSF Chimera (or simply Chimera) is an extensible program for interactive visualization and analysis of molecular structures and related data, including density maps, supramolecular assemblies, sequence alignments, docking results, trajectories, and conformational ensembles. [1]
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