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Scientists and graph theorists continuously discover new ways of sub sectioning networks and thus a plethora of different algorithms exist for creating these relationships. [56] Like many other tools that biologists utilize to understand data with network models, every algorithm can provide its own unique insight and may vary widely on aspects ...
Biological data visualization is a branch of bioinformatics concerned with the application of computer graphics, scientific visualization, and information visualization to different areas of the life sciences.
Image and signal processing allow extraction of useful results from large amounts of raw data. In the field of genetics, it aids in sequencing and annotating genomes and their observed mutations . Bioinformatics includes text mining of biological literature and the development of biological and gene ontologies to organize and query biological data.
The ORF Finder (Open Reading Frame Finder) [16] is a graphical analysis tool which finds all open reading frames of a selectable minimum size in a user's sequence or in a sequence already in the database. This tool identifies all open reading frames using the standard or alternative genetic codes.
The open neighborhood of v in G may be denoted N G (v) or N(v), and the closed neighborhood may be denoted N G [v] or N[v]. When the openness or closedness of a neighborhood is not specified, it is assumed to be open. network A graph in which attributes (e.g. names) are associated with the nodes and/or edges. node A synonym for vertex. non-edge
Graph drawing is an area of mathematics and computer science combining methods from geometric graph theory and information visualization to derive two-dimensional depictions of graphs arising from applications such as social network analysis, cartography, linguistics, and bioinformatics.
An upstream open reading frame (uORF) is an open reading frame (ORF) within the 5' untranslated region (5'UTR) of an mRNA. uORFs can regulate eukaryotic gene expression. [1] [2] Translation of the uORF typically inhibits downstream expression of the primary ORF. However, in some genes such as yeast GCN4, translation of specific uORFs may ...
Computational biology is a specialized domain that often requires knowledge of computer programming. Galaxy aims to give biomedical researchers access to computational biology without also requiring them to understand computer programming. [13] [14] Galaxy does this by stressing a simple user interface [15] over the ability to build complex ...