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The restriction modification system (RM system) is found in bacteria and archaea, and provides a defense against foreign DNA, such as that borne by bacteriophages.. Bacteria have restriction enzymes, also called restriction endonucleases, which cleave double-stranded DNA at specific points into fragments, which are then degraded further by other endonucleases.
This article contains a list of the most studied restriction enzymes whose names start with Ba to Bc inclusive. It contains approximately 120 enzymes. The following information is given: Enzyme: Accepted name of the molecule, according to the internationally adopted nomenclature [1] [2], and bibliographical references.
Virus classification showing major ranks This is a list of biological virus families and subfamilies. See also Comparison of computer viruses. This is an alphabetical list of biological virus families and subfamilies; it includes those families and subfamilies listed by the ICTV 2023 report. [1] For a list of individual species, see List of ...
EcoRI (pronounced "eco R one") is a restriction endonuclease enzyme isolated from species E. coli. It is a restriction enzyme that cleaves DNA double helices into fragments at specific sites, and is also a part of the restriction modification system. [1]
See also Comparison of computer viruses. This is an alphabetical list of genera of biological viruses. It includes all genera and subgenera of viruses listed by the International Committee on Taxonomy of Viruses (ICTV) 2022 release. [1] For a list of virus families and subfamilies, see List of virus families and subfamilies.
E. coli BL21(DE3) lacks a functional type I restriction-modification system, indicated by hsdS(r B − m B −). Specifically, both the restriction (hsdR) and modification (hsdM) domains are inactive. This enhances transformation efficiency since exogenously introduced unmethylated DNA remains untargeted by the restriction-modification system. [9]
Type III site-specific deoxyribonuclease (EC 3.1.21.5, type III restriction enzyme, restriction-modification system) is an enzyme. [1] This enzyme catalyses the following chemical reaction Endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'- phosphates
Several databases exist for restriction sites and enzymes, of which the largest noncommercial database is REBASE. [5] [6] Recently, it has been shown that statistically significant nullomers (i.e. short absent motifs which are highly expected to exist) in virus genomes are restriction sites indicating that viruses have probably got rid of these motifs to facilitate invasion of bacterial hosts. [7]