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  2. Ensembl Genomes - Wikipedia

    en.wikipedia.org/wiki/Ensembl_Genomes

    Most Ensembl Genomes data is stored in MySQL relational databases and can be accessed by the Ensembl REST interface, the Perl API, Biomart or online. [5] Ensembl Genomes is an open project, and most of the code, tools, and data are available to the public. [6] Ensembl and Ensembl Genomes software uses an Apache 2.0 license [7] license.

  3. List of open-source bioinformatics software - Wikipedia

    en.wikipedia.org/wiki/List_of_open-source...

    Component-based data mining and machine learning software suite written in C++, featuring a visual programming front-end for exploratory data analysis and interactive visualization, and Python bindings and libraries for scripting Linux, macOS, Windows: GPL: University of Ljubljana: SAMtools

  4. Ensembl genome database project - Wikipedia

    en.wikipedia.org/wiki/Ensembl_genome_database...

    The Ensembl website provides extensive information on how to install and use the API. This software can be used to access the public MySQL database, avoiding the need to download enormous datasets. The users could even choose to retrieve data from the MySQL with direct SQL queries, but this requires an extensive knowledge of the current ...

  5. List of biological databases - Wikipedia

    en.wikipedia.org/wiki/List_of_biological_databases

    Ensembl: provides automatic annotation databases for human, mouse, other vertebrate and eukaryote genomes Ensembl Genomes : provides genome-scale data for bacteria, protists, fungi, plants and invertebrate metazoa, through a unified set of interactive and programmatic interfaces (using the Ensembl software platform)

  6. GeneCards - Wikipedia

    en.wikipedia.org/wiki/GeneCards

    The background indicates the symbol sources: HGNC Approved Genes, EntrezGene Database, Ensembl Gene Database, or GeneCards Generated Genes. Aliases: Aliases, as its name indicates, shows synonyms and aliases of the gene according to diverse sources such as HGNC. The right column displays how the aliases associated with the resources and gives ...

  7. List of in-memory databases - Wikipedia

    en.wikipedia.org/wiki/List_of_in-memory_databases

    Java, C#, C, Python, Go, Node.js, Perl, libevent, PHP, Ruby, Rust Open Source (AGPL) Flash-optimized in-memory open source NoSQL database. ALTIBASE HDB: Altibase Corporation 1999 Java, C, C++, JDBC, ODBC, SQL Proprietary Altibase is a hybrid DBMS that combines an in-memory database with a conventional disk-resident database in a single unified ...

  8. LAMP (software bundle) - Wikipedia

    en.wikipedia.org/wiki/LAMP_(software_bundle)

    The web server or database management system also varies. LEMP is a version where Apache has been replaced with the more lightweight web server Nginx. [6] A version where MySQL has been replaced by PostgreSQL is called LAPP, or sometimes by keeping the original acronym, LAMP (Linux / Apache / Middleware (Perl, PHP, Python, Ruby) / PostgreSQL). [7]

  9. Comparison of web-based genealogy software - Wikipedia

    en.wikipedia.org/wiki/Comparison_of_web-based...

    Database; Genea.app OS Independent JavaScript: Direct download, Git: Geneotree OS Independent [8] JavaScript, PHP [8] MySQL [8] GeneWeb: OS Independent OCaml? Gramps Web: OS Independent [9] JavaScript, Python [9] SQLite, Postgresql [9] HuMo-gen: OS Independent [10] JavaScript, PHP [10] MySQL [10] PhpGedView: OS Independent [11] JavaScript, [11 ...