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The set ret is used to hold the set of strings which are of length z. The set ret can be saved efficiently by just storing the index i, which is the last character of the longest common substring (of size z) instead of S[i-z+1..i]. Thus all the longest common substrings would be, for each i in ret, S[(ret[i]-z)..(ret[i])].
A suffix tree of the letters ATCGATCGA$. In computer science, the longest repeated substring problem is the problem of finding the longest substring of a string that occurs at least twice. This problem can be solved in linear time and space by building a suffix tree for the string (with a special end-of-string symbol like '$' appended), and ...
A longest common subsequence (LCS) is the longest subsequence common to all sequences in a set of sequences (often just two sequences). It differs from the longest common substring: unlike substrings, subsequences are not required to occupy consecutive positions within the original sequences. The problem of computing longest common subsequences ...
Longest palindromic substring. In computer science, the longest palindromic substring or longest symmetric factor problem is the problem of finding a maximum-length contiguous substring of a given string that is also a palindrome. For example, the longest palindromic substring of "bananas" is "anana". The longest palindromic substring is not ...
Syntactic sugar. In computer science, syntactic sugar is syntax within a programming language that is designed to make things easier to read or to express. It makes the language "sweeter" for human use: things can be expressed more clearly, more concisely, or in an alternative style that some may prefer. Syntactic sugar is usually a shorthand ...
In information theory, linguistics, and computer science, the Levenshtein distance is a string metric for measuring the difference between two sequences. The Levenshtein distance between two words is the minimum number of single-character edits (insertions, deletions or substitutions) required to change one word into the other.
Edit distance. In computational linguistics and computer science, edit distance is a string metric, i.e. a way of quantifying how dissimilar two strings (e.g., words) are to one another, that is measured by counting the minimum number of operations required to transform one string into the other. Edit distances find applications in natural ...
LCP array. In computer science, the longest common prefix array (LCP array) is an auxiliary data structure to the suffix array. It stores the lengths of the longest common prefixes (LCPs) between all pairs of consecutive suffixes in a sorted suffix array. For example, if A := [aab, ab, abaab, b, baab] is a suffix array, the longest common ...