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A combination of tools is employed: PALMapper (reads alignment), mTiM and mGene (inference of new transcripts). Salmon is a software tool for computing transcript abundance from RNA-seq data using either an alignment-free (based directly on the raw reads) or an alignment-based (based on pre-computed alignments) approach. It uses an online ...
For full 3-D threading, the problem of identifying the best alignment is very difficult (it is an NP-hard problem for some models of threading). [ citation needed ] Researchers have made use of many combinatorial optimization methods such as conditional random fields , simulated annealing , branch and bound , and linear programming , searching ...
modeFRONTIER – an integration platform for multi-objective and multidisciplinary optimization, which provides a seamless coupling with third party engineering tools, enables the automation of the design simulation process, and facilitates analytic decision-making. Maple – linear, quadratic, and nonlinear, continuous and integer optimization ...
A keto diet could improve blood sugar, gut microbiota composition, body mass index (BMI), and waist circumference more than a Mediterranean diet, but only in the short term.
In the last few years, the agent-based modeling (ABM) community has developed several practical agent based modeling toolkits that enable individuals to develop agent-based applications.
As wildfires continue to rage through the Los Angeles area, the NFL has already put together an alternate plan for the Vikings-Rams playoff game.
NEW YORK (Reuters) -Do Kwon, the South Korean cryptocurrency entrepreneur behind two digital currencies that lost an estimated $40 billion in 2022, pleaded not guilty on Thursday to U.S. criminal ...
VisualVM is a visual tool integrating several commandline JDK tools and lightweight profiling capabilities. It is bundled with the Java Development Kit since version 6, update 7. FusionReactor , Java application performance monitoring - low overhead, production grade tools for production debugging, code profiling, memory and thread analysis