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  2. List of RNA structure prediction software - Wikipedia

    en.wikipedia.org/wiki/List_of_RNA_structure...

    An RNA secondary structure prediction software based on feature-rich trained scoring models. No: sourcecode webserver [4] CONTRAfold: Secondary structure prediction method based on conditional log-linear models (CLLMs), a flexible class of probabilistic models which generalize upon SCFGs by using discriminative training and feature-rich scoring. No

  3. List of RNA-Seq bioinformatics tools - Wikipedia

    en.wikipedia.org/wiki/List_of_RNA-Seq...

    GT-FAR is an RNA seq pipeline that performs RNA-seq QC, alignment, reference free quantification, and splice variant calling. It filters, trims, and sequentially aligns reads to gene models and predicts and validates new splice junctions after which it quantifies expression for each gene, exon, and known/novel splice junction, and Variant Calling.

  4. Galaxy (computational biology) - Wikipedia

    en.wikipedia.org/wiki/Galaxy_(computational_biology)

    Galaxy [2] is a scientific workflow, data integration, [3] [4] and data and analysis persistence and publishing platform that aims to make computational biology accessible to research scientists that do not have computer programming or systems administration experience.

  5. Category:Free project management software - Wikipedia

    en.wikipedia.org/wiki/Category:Free_project...

    Free and open-source software portal; This is a category of articles relating to project management software which can be freely used, copied, studied, modified, and redistributed by everyone that obtains a copy: free software (or "open-source software").

  6. List of free and open-source software packages - Wikipedia

    en.wikipedia.org/wiki/List_of_free_and_open...

    This is a list of free and open-source software packages, computer software licensed under free software licenses and open-source licenses.Software that fits the Free Software Definition may be more appropriately called free software; the GNU project in particular objects to their works being referred to as open-source. [1]

  7. Mathematical modelling of infectious diseases - Wikipedia

    en.wikipedia.org/wiki/Mathematical_modelling_of...

    Software. Model-Builder: Interactive (GUI-based) software to build, simulate, and analyze ODE models. GLEaMviz Simulator: Enables simulation of emerging infectious diseases spreading across the world. STEM: Open source framework for Epidemiological Modeling available through the Eclipse Foundation.

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  9. Viral metagenomics - Wikipedia

    en.wikipedia.org/wiki/Viral_metagenomics

    In the 2002 metagenomics study the researchers found that 65% of the sequences of DNA and RNA viruses had no matches in the reference databases. [10] This phenomenon of unmatched viral sequences in sequence reference databases is prevalent in viral metagenomics studies and is referred to as “viral dark matter".

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