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When it comes to the use of specific terms, a clear differentiation between microbiome and microbiota helps to avoid the controversy concerning the members of a microbiome. [1] Microbiota is usually defined as the assemblage of living microorganisms present in a defined environment. [64]
Graphic depicting the human skin microbiota, with relative prevalences of various classes of bacteria. The human microbiome is the aggregate of all microbiota that reside on or within human tissues and biofluids along with the corresponding anatomical sites in which they reside, [1] [2] including the gastrointestinal tract, skin, mammary glands, seminal fluid, uterus, ovarian follicles, lung ...
The microbiome and host emerged during evolution as a synergistic unit from epigenetics and genetic characteristics, sometimes collectively referred to as a holobiont. [7] [8] The presence of microbiota in human and other metazoan guts has been critical for understanding the co-evolution between metazoans and bacteria.
Gut microbiota, gut microbiome, or gut flora are the microorganisms, including bacteria, archaea, fungi, and viruses, that live in the digestive tracts of animals. [1] [2] The gastrointestinal metagenome is the aggregate of all the genomes of the gut microbiota. [3] [4] The gut is the main location of the human microbiome. [5]
In 2014, the Earth Microbiome project proposed a broad initiative to identify the diversity and importance of the microbiota in different ecosystems across the planet, including free-living microbiota (in water and terrestrial systems) and host associated-microbiota (associated with plants and animals). [7]
Human microbiota are microorganisms (bacteria, viruses, fungi and archaea) found in a specific environment. They can be found in the stomach, intestines, skin, genitals and other parts of the body. [1] Various body parts have diverse microorganisms. Some microbes are specific to certain body parts and others are associated with many microbiomes.
The gut–brain axis is the two-way biochemical signaling that takes place between the gastrointestinal tract (GI tract) and the central nervous system (CNS). [2] The term "microbiota–gut–brain axis" highlights the role of gut microbiota in these biochemical signaling.
Immunocompromised individuals are especially vulnerable to bacteria that are typically nonpathogenic; because of a compromised immune system, disease occurs when these bacteria gain access to the body's interior. Genes have been identified that predispose disease and infection with nonpathogenic bacteria by a small number of persons. [3]