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  2. Comparison of software for molecular mechanics modeling

    en.wikipedia.org/wiki/Comparison_of_software_for...

    fold.it download page Archived 2011-04-04 at the Wayback Machine: FoldX: I Yes Yes No No No No No No Energy calculations, protein design Proprietary, commercial or gratis CRG: GROMACS: No No Yes Yes No [2] Yes I Yes [3] Yes High performance MD Free open source GNU GPL: gromacs.org: GROMOS: No No Yes Yes Yes Yes Yes Yes Yes Intended for biomolecules

  3. List of protein subcellular localization prediction tools

    en.wikipedia.org/wiki/List_of_protein_sub...

    BASys (Bacterial Annotation System) is a tool for automated annotation of bacterial genomic (chromosomal and plasmid) sequences including gene/protein names, GO functions, COG functions, possible paralogues and orthologues, molecular weights, isoelectric points, operon structures, subcellular localization, signal peptides, transmembrane regions ...

  4. List of mass spectrometry software - Wikipedia

    en.wikipedia.org/wiki/List_of_mass_spectrometry...

    The msFineAnalysis AI version for JEOL's GC-time-of-flight mass spectrometers contains a searchable in-silico database of mass spectra calculated for the 100 million structures in the PubChem database. MSGraph Open source: This tool does qualitative analysis of mass spectrometric (MS) data and is hosted by Sourceforge. MSight Freeware

  5. Protein design - Wikipedia

    en.wikipedia.org/wiki/Protein_design

    The goal in rational protein design is to predict amino acid sequences that will fold to a specific protein structure. Although the number of possible protein sequences is vast, growing exponentially with the size of the protein chain, only a subset of them will fold reliably and quickly to one native state.

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  7. US shuts Kyiv embassy due to 'potential significant air attack'

    www.aol.com/news/us-embassy-kyiv-shuts-down...

    KYIV (Reuters) -The United States shut its embassy in Kyiv on Wednesday due to "specific information of a potential significant air attack" and told its citizens in Ukraine to be ready to swiftly ...

  8. Peptide library - Wikipedia

    en.wikipedia.org/wiki/Peptide_library

    A peptide library is a tool for studying proteins.Peptide libraries typically contain a large number of peptides that have a systematic combination of amino acids.Usually, solid phase synthesis, e.g. resin as a flat surface or beads, is used for peptide library generation.

  9. Machine learning in bioinformatics - Wikipedia

    en.wikipedia.org/wiki/Machine_learning_in...

    The increase of experimentally characterized ribosomally synthesized and post-translationally modified peptides (RiPPs), together with the availability of information on their sequence and chemical structure, selected from databases such as BAGEL, BACTIBASE, MIBIG, and THIOBASE, provide the opportunity to develop machine learning tools to ...