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Name Description Knots [Note 1]Links References trRosettaRNA: trRosettaRNA is an algorithm for automated prediction of RNA 3D structure. It builds the RNA structure by Rosetta energy minimization, with deep learning restraints from a transformer network (RNAformer). trRosettaRNA has been validated in blind tests, including CASP15 and RNA-Puzzles, which suggests that the automated predictions ...
MacVector is a commercial sequence analysis application for Apple Macintosh computers running Mac OS X. It is intended to be used by molecular biologists to help analyze, design, research and document their experiments in the laboratory. MacVector 18.1 is a Universal Binary capable of running on Intel and Apple Silicon Macs.
Up until version 2.3, Keras supported multiple backends, including TensorFlow, Microsoft Cognitive Toolkit, Theano, and PlaidML. [7] [8] [9] As of version 2.4, only TensorFlow was supported. Starting with version 3.0 (as well as its preview version, Keras Core), however, Keras has become multi-backend again, supporting TensorFlow, JAX, and ...
Keras: François Chollet 2015 MIT license: Yes Linux, macOS, Windows: Python: Python, R: Only if using Theano as backend Can use Theano, Tensorflow or PlaidML as backends Yes No Yes Yes [20] Yes Yes No [21] Yes [22] Yes MATLAB + Deep Learning Toolbox (formally Neural Network Toolbox) MathWorks: 1992 Proprietary: No Linux, macOS, Windows: C, C++ ...
wapRNA This is a free web-based application for the processing of high-throughput RNA-Seq data (wapRNA) from next generation sequencing (NGS) platforms, such as Genome Analyzer of Illumina Inc. (Solexa) and SOLiD of Applied Biosystems (SOLiD). wapRNA provides an integrated tool for RNA sequence, refers to the use of High-throughput sequencing ...
Uses an iterative version of the Rabin-Karp string search algorithm. Yes Free, GPL: SparkBWA Integrates the Burrows–Wheeler Aligner (BWA) on an Apache Spark framework running atop Hadoop. Version 0.2 of October 2016, supports the algorithms BWA-MEM, BWA-backtrack, and BWA-ALN. All of them work with single-reads and paired-end reads. Yes
Eclipse Deeplearning4j is a programming library written in Java for the Java virtual machine (JVM). [ 2 ] [ 3 ] It is a framework with wide support for deep learning algorithms. [ 4 ] Deeplearning4j includes implementations of the restricted Boltzmann machine , deep belief net , deep autoencoder, stacked denoising autoencoder and recursive ...
The Standard edition adds database tools, a visual web designer, persistence tools, Spring tools, Struts and JSF tooling, and a number of other features to the basic Eclipse Java Developer profile. It competes with the Web Tools Project, which is a part of Eclipse itself, but MyEclipse is a separate project entirely and offers a different ...