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Most Ensembl Genomes data is stored in MySQL relational databases and can be accessed by the Ensembl REST interface, the Perl API, Biomart or online. [5] Ensembl Genomes is an open project, and most of the code, tools, and data are available to the public. [6] Ensembl and Ensembl Genomes software uses an Apache 2.0 license [7] license.
In the Ensembl project, sequence data are fed into the gene annotation system (a collection of software "pipelines" written in Perl) which creates a set of predicted gene locations and saves them in a MySQL database for subsequent analysis and display. Ensembl makes these data freely accessible to the world research community.
MySQL (/ ˌ m aɪ ˌ ɛ s ˌ k juː ˈ ɛ l /) [5] is an open-source relational database management system (RDBMS). [5] [6] Its name is a combination of "My", the name of co-founder Michael Widenius's daughter My, [7] and "SQL", the acronym for Structured Query Language.
A data control language (DCL) is a syntax similar to a computer programming language used to control access to data stored in a database (authorization).In particular, it is a component of Structured Query Language (SQL).
MySQL Workbench – official (yet 3rd-party developed) integrated environment for MySQL. It was developed by MySQL AB, and enables users to graphically administer MySQL databases and visually design database structures. Adminer – free MySQL front end capable of managing multiple databases, with many CSS skins available. It is a light-weight ...
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By eliminating the MySQL server overhead, InnoDB has a small footprint and is well-suited for embedding in applications which require high-performance and concurrency. As with most embedded database systems, HailDB is designed to be accessed primarily with an ISAM -like C API rather than SQL (though an extremely rudimentary SQL variant is ...
The syntax of the SQL programming language is defined and maintained by ISO/IEC SC 32 as part of ISO/IEC 9075.This standard is not freely available. Despite the existence of the standard, SQL code is not completely portable among different database systems without adjustments.