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The atomic binding energy of the atom is the energy required to disassemble an atom into free electrons and a nucleus. [4] It is the sum of the ionization energies of all the electrons belonging to a specific atom. The atomic binding energy derives from the electromagnetic interaction of the electrons with the nucleus, mediated by photons.
This free-energy map is also known as a potential of mean force (PMF). Free-energy perturbation calculations only converge properly when the difference between the two states is small enough; therefore it is usually necessary to divide a perturbation into a series of smaller "windows", which are computed independently.
In thermodynamics, the Gibbs free energy (or Gibbs energy as the recommended name; symbol ) is a thermodynamic potential that can be used to calculate the maximum amount of work, other than pressure–volume work, that may be performed by a thermodynamically closed system at constant temperature and pressure.
An equilibrium constant is related to the standard Gibbs free energy change for the reaction = R is the gas constant and T is the absolute temperature. At 25 °C, ΔG ⊖ = (−5.708 kJ mol −1) ⋅ log β. Free energy is made up of an enthalpy term and an entropy term.
Ligand efficiency is a measurement of the binding energy per atom of a ligand to its binding partner, such as a receptor or enzyme. [1]Ligand efficiency is used in drug discovery research programs to assist in narrowing focus to lead compounds with optimal combinations of physicochemical properties and pharmacological properties.
The binding constant, or affinity constant/association constant, is a special case of the equilibrium constant K, [1] and is the inverse of the dissociation constant. [2] It is associated with the binding and unbinding reaction of receptor (R) and ligand (L) molecules, which is formalized as: R + L ⇌ RL
Coulomb energy, the potential energy from each pair of protons. As this is a repelling force, the binding energy is reduced. Asymmetry energy (also called Pauli energy), which accounts for the Pauli exclusion principle. Unequal numbers of neutrons and protons imply filling higher energy levels for one type of particle, while leaving lower ...
Therefore, only relative free energy values, or changes in free energy, are physically meaningful. The free energy is the portion of any first-law energy that is available to perform thermodynamic work at constant temperature, i.e., work mediated by thermal energy. Free energy is subject to irreversible loss in the course of such work. [1]