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When reading files, descriptive information in the file is used to populate the members of Biopython classes, such as SeqRecord. This allows records of one file format to be converted into others. Very large sequence files can exceed a computer's memory resources, so Biopython provides various options for accessing records in large files.
reStructuredText (RST, ReST, or reST) is a file format for textual data used primarily in the Python programming language community for technical documentation.. It is part of the Docutils project of the Python Doc-SIG (Documentation Special Interest Group), aimed at creating a set of tools for Python similar to Javadoc for Java or Plain Old Documentation (POD) for Perl.
RRDtool (round-robin database tool) aims to handle time series data such as network bandwidth, temperatures or CPU load. The data is stored in a circular buffer based database, thus the system storage footprint remains constant over time. It also includes tools to extract round-robin data in a graphical format, for which it was originally intended.
This is a list of free and open-source software (FOSS) packages, computer software licensed under free software licenses and open-source licenses. Software that fits the Free Software Definition may be more appropriately called free software ; the GNU project in particular objects to their works being referred to as open-source . [ 1 ]
SQLAlchemy offers tools for database schema generation, querying, and object-relational mapping. Key features include: A comprehensive embedded domain-specific language for SQL in Python called "SQLAlchemy Core" that provides means to construct and execute SQL queries. A powerful ORM that allows the mapping of Python classes to database tables.
As the load phase interacts with a database, the constraints defined in the database schema – as well as in triggers activated upon data load – apply (for example, uniqueness, referential integrity, mandatory fields), which also contribute to the overall data quality performance of the ETL process.
preload is a free Linux program which runs as a daemon to record statistics about usage of files by more frequently-used programs. This information is then used to keep these files preloaded into memory. [1]
Hierarchical Data Format (HDF) is a set of file formats (HDF4, HDF5) designed to store and organize large amounts of data.Originally developed at the U.S. National Center for Supercomputing Applications, it is supported by The HDF Group, a non-profit corporation whose mission is to ensure continued development of HDF5 technologies and the continued accessibility of data stored in HDF.