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MUltiple Sequence Comparison by Log-Expectation (MUSCLE) is a computer software for multiple sequence alignment of protein and nucleotide sequences. It is licensed as public domain. The method was published by Robert C. Edgar in two papers in 2004. The first paper, published in Nucleic Acids Research, introduced the sequence alignment algorithm ...
Clustal Omega, ClustalW2, MAFFT, MUSCLE, BioJava are integrated to construct alignment. Tree calculation tool calculates phylogenetic tree using BioJava API and lets user draw trees using Archaeopteryx. Software is package of 7 interactive visual tools for multiple sequence alignments. Major focus is manipulating large alignments.
Proprietary freeware. Website. www.megasoftware.net. Molecular Evolutionary Genetics Analysis (MEGA) is computer software for conducting statistical analysis of molecular evolution and for constructing phylogenetic trees. It includes many sophisticated methods and tools for phylogenomics and phylomedicine. It is licensed as proprietary freeware.
MAFFT v5 – The second generation software, released in 2005, was a rewrite of the original software. [3] This generation introduced a simplified scoring system that performs well for reducing CPU time and increasing accuracy of alignments even for sequences having large insertions or extensions as well as distantly related sequences of ...
Microsoft PowerToys is a set of freeware system utilities designed for power users developed by Microsoft for use on the Windows operating system. These programs add or change features to maximize productivity or add more customization. PowerToys are available for Windows 95, Windows XP, Windows 10 and Windows 11. [3]
Clustal is a computer program used for multiple sequence alignment in bioinformatics. [2] The software and its algorithms have gone through several iterations, with ClustalΩ (Omega) being the latest version as of 2011. It is available as standalone software, via a web interface, and through a server hosted by the European Bioinformatics Institute.
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List of repetitive strain injury software. Repetitive strain injuries (RSI) are injuries to the body's muscles, joints, tendons, ligaments, bones, or nerves caused by repetitive movements. [1] Such injuries are more likely if the movements required force or were accompanied by vibrations, compression, hyperextension, or the maintenance of ...