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A series of profiles can then be the identification marker for strain typing. Sequences that differ at even a single nucleotide are assigned as different alleles and no weighting is given to take into account the number of nucleotide differences between alleles, as we cannot distinguish whether differences at multiple nucleotide sites are a ...
Phage typing is a phenotypic method that uses bacteriophages ("phages" for short) for detecting and identifying single strains of bacteria. [1] Phages are viruses that infect bacteria and may lead to bacterial cell lysis. [2] The bacterial strain is assigned a type based on its lysis pattern. [3]
For example, the type strain of E. coli (originally strain U5/41) is called ATCC 11775 by the American Type Culture Collection, DSM 30083 by the German Collection of Microorganisms and Cell Cultures, JCM 1649 by the Japan Collection of Microorganisms, and LMG 2092 by the Belgian Coordinated Collections of Microorganisms.
In the UK, the most common strains of MRSA are EMRSA15 and EMRSA16. [56] EMRSA16 has been found to be identical to the ST36:USA200 strain, which circulates in the United States, and to carry the SCCmec type II, enterotoxin A and toxic shock syndrome toxin 1 genes. [57] Under the new international typing system, this strain is now called MRSA252.
Two serotypes 1a and 1b with antigens 2a and 2b on surface, which are recognized by two distinct antibodies, 3a and 3b, respectively. A serotype or serovar is a distinct variation within a species of bacteria or virus or among immune cells of different individuals.
Western blot workflow. The western blot (sometimes called the protein immunoblot), or western blotting, is a widely used analytical technique in molecular biology and immunogenetics to detect specific proteins in a sample of tissue homogenate or extract. [1]
Machine learning algorithms in bioinformatics can be used for prediction, classification, and feature selection. Methods to achieve this task are varied and span many disciplines; most well known among them are machine learning and statistics.
Slow strain rate testing (SSRT), also called constant extension rate tensile testing (CERT), is a popular test used by research scientists to study stress corrosion cracking. It involves a slow (compared to conventional tensile tests) dynamic strain applied at a constant extension rate in the environment of interest.
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