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Most biological macromolecules contain few or no halogen atoms. But when molecules do contain halogens, halogen bonds are often essential to understanding molecular conformation. Computational studies suggest that known halogenated nucleobases form halogen bonds with oxygen, nitrogen, or sulfur in vitro.
A polar bond is a covalent bond in which there is a separation of charge between one end and the other - in other words in which one end is slightly positive and the other slightly negative. Examples include most covalent bonds. The hydrogen-chlorine bond in HCl or the hydrogen-oxygen bonds in water are typical.
The strength of a bond can be estimated by comparing the atomic radii of the atoms that form the bond to the length of bond itself. For example, the atomic radius of boron is estimated at 85 pm, [10] while the length of the B–B bond in B 2 Cl 4 is 175 pm. [11] Dividing the length of this bond by the sum of each boron atom's radius gives a ratio of
Strongly electronegative atoms (such as halogens) often have only one or two empty electron states in their valence shell, and frequently bond with other atoms or gain electrons to form anions. Weakly electronegative atoms (such as alkali metals) have relatively few valence electrons, which can easily be lost to strongly electronegative atoms.
Hydrogen bonds of the form A--H•••B occur when A and B are two highly electronegative atoms (usually N, O or F) such that A forms a highly polar covalent bond with H so that H has a partial positive charge, and B has a lone pair of electrons which is attracted to this partial positive charge and forms a hydrogen bond.
Metallic solids are held together by a high density of shared, delocalized electrons, resulting in metallic bonding. Classic examples are metals such as copper and aluminum , but some materials are metals in an electronic sense but have negligible metallic bonding in a mechanical or thermodynamic sense (see intermediate forms ).
Bond cleavage is also possible by a process called heterolysis. The energy involved in this process is called bond dissociation energy (BDE). [2] BDE is defined as the "enthalpy (per mole) required to break a given bond of some specific molecular entity by homolysis," symbolized as D. [3]
The electron affinity (E ea) of an atom or molecule is defined as the amount of energy released when an electron attaches to a neutral atom or molecule in the gaseous state to form an anion. X(g) + e − → X − (g) + energy. This differs by sign from the energy change of electron capture ionization. [1]