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  2. Database of Interacting Proteins - Wikipedia

    en.wikipedia.org/wiki/Database_of_Interacting...

    The Database of Interacting Proteins (DIP) is a biological database which catalogs experimentally determined interactions between proteins. [ 2 ] [ 3 ] It combines information from a variety of sources to create a single, consistent set of proteinprotein interactions.

  3. List of biological databases - Wikipedia

    en.wikipedia.org/wiki/List_of_biological_databases

    RNA-binding protein database: Protein-protein and other molecular interactions Database of Interacting Proteins: Univ. of California: Protein-protein and other molecular interactions IntAct [21] EMBL-EBI: open-source database for molecular interactions Protein-protein and other molecular interactions String: an open source molecular interaction ...

  4. ConsensusPathDB - Wikipedia

    en.wikipedia.org/wiki/ConsensusPathDB

    The ConsensusPathDB is a molecular functional interaction database, integrating information on protein interactions, genetic interactions signaling, metabolism, gene regulation, and drug-target interactions in humans. ConsensusPathDB currently (release 30) includes such interactions from 32 databases. [1]

  5. BioGRID - Wikipedia

    en.wikipedia.org/wiki/BioGRID

    The Biological General Repository for Interaction Datasets (BioGRID) is a curated biological database of protein-protein interactions, genetic interactions, chemical interactions, and post-translational modifications created in 2003 (originally referred to as simply the General Repository for Interaction Datasets (GRID) [2] by Mike Tyers, Bobby-Joe Breitkreutz, and Chris Stark at the Lunenfeld ...

  6. iRefIndex - Wikipedia

    en.wikipedia.org/wiki/IRefIndex

    iRefIndex provides an index of protein interactions available in a number of primary interaction databases including BIND, BioGRID, CORUM, DIP, HPRD, InnateDB, IntAct, MatrixDB, MINT, MPact, MPIDB, MPPI and OPHID.

  7. Protein–protein interaction - Wikipedia

    en.wikipedia.org/wiki/Proteinprotein_interaction

    The protein protein interactions are displayed in a signed network that describes what type of interactions that are taking place [74] Proteinprotein interactions often result in one of the interacting proteins either being 'activated' or 'repressed'. Such effects can be indicated in a PPI network by "signs" (e.g. "activation" or "inhibition").

  8. Biomolecular Object Network Databank - Wikipedia

    en.wikipedia.org/wiki/Biomolecular_Object...

    The data in SMID is derived from the Protein Data Bank (PDB), a database of known protein crystal structures. SMID can be queried by entering a protein GI, domain identifier, PDB ID or SMID ID. The results of a search provide small molecule, protein, and domain information for each interaction identified in the database.

  9. STRING - Wikipedia

    en.wikipedia.org/wiki/STRING

    Exploring the predicted interaction networks can suggest new directions for future experimental research and provide cross-species predictions for efficient interaction mapping. [7] Proteinprotein interaction network visualized by STRING. In this view, the color saturation of the edges represents the confidence score of a functional association