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DESeq2 is a software package in the field of bioinformatics and computational biology for the statistical programming language R. It is primarily employed for the analysis of high-throughput RNA sequencing (RNA-seq) data to identify differentially expressed genes between different experimental conditions.
Within computational biology, an MA plot is an application of a Bland–Altman plot for visual representation of genomic data. The plot visualizes the differences between measurements taken in two samples, by transforming the data onto M (log ratio) and A (mean average) scales, then plotting these values.
In morphology and lexicography, a lemma is the canonical form of a set of words. In English , for example, run , runs , ran , and running are forms of the same lexeme , so we can select one of them; ex. run , to represent all the forms.
fastqp Simple FASTQ quality assessment using Python. Kraken: [9] A set of tools for quality control and analysis of high-throughput sequence data. HTSeq [10] The Python script htseq-qa takes a file with sequencing reads (either raw or aligned reads) and produces a PDF file with useful plots to assess the technical quality of a run.
Instance normalization (InstanceNorm), or contrast normalization, is a technique first developed for neural style transfer, and is also only used for CNNs. [26] It can be understood as the LayerNorm for CNN applied once per channel, or equivalently, as group normalization where each group consists of a single channel:
The following list contains syntax examples of how a range of element of an array can be accessed. In the following table: first – the index of the first element in the slice
Without normalization, the clusters were arranged along the x-axis, since it is the axis with most of variation. After normalization, the clusters are recovered as expected. In machine learning, we can handle various types of data, e.g. audio signals and pixel values for image data, and this data can include multiple dimensions. Feature ...
Therefore, in computer algebra, normal form is a weaker notion: A normal form is a representation such that zero is uniquely represented. This allows testing for equality by putting the difference of two objects in normal form. Canonical form can also mean a differential form that is defined in a natural (canonical) way.