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PSI Protein Classifier is a program generalizing the results of both successive and independent iterations of the PSI-BLAST program. PSI Protein Classifier determines belonging of the found by PSI-BLAST proteins to the known families. The unclassified proteins are grouped according to similarity.
CS-BLAST greatly improves alignment quality over the entire range of sequence identities and especially for difficult alignments in comparison to regular BLAST and PSI-BLAST. PSI-BLAST (Position-Specific Iterated BLAST) runs at about the same speed per iteration as regular BLAST, but is able to detect weaker sequence similarities that are still ...
The open-source software MMseqs is an alternative to BLAST/PSI-BLAST, which improves on current search tools over the full range of speed-sensitivity trade-off, achieving sensitivities better than PSI-BLAST at more than 400 times its speed. [27]
A 5 psi blast overpressure will rupture eardrums in about 1% of subjects, and a 45 psi overpressure will cause eardrum rupture in about 99% of all subjects. The threshold for lung damage occurs at about 15 psi blast overpressure. A 35-45 psi overpressure may cause 1% fatalities, and 55 to 65 psi overpressure may cause 99% fatalities. [3]
A profile HMM modelling a multiple sequence alignment. HMMER is a free and commonly used software package for sequence analysis written by Sean Eddy. [2] Its general usage is to identify homologous protein or nucleotide sequences, and to perform sequence alignments.
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EoNW77 shows the maximum low-pressure ranges at somewhat lower altitudes whereas for high pressures >40 psi BLAST shows no optimum altitudes at all (see the innermost isobar). However, since numerical fitting of curves taken from a paper would be a Sisyphean task while BLAST already outputs plottable numbers, only isobars from the latter are ...
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