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The longest common substrings of a set of strings can be found by building a generalized suffix tree for the strings, and then finding the deepest internal nodes which have leaf nodes from all the strings in the subtree below it. The figure on the right is the suffix tree for the strings "ABAB", "BABA" and "ABBA", padded with unique string ...
The string spelled by the edges from the root to such a node is a longest repeated substring. The problem of finding the longest substring with at least k {\displaystyle k} occurrences can be solved by first preprocessing the tree to count the number of leaf descendants for each internal node, and then finding the deepest node with at least k ...
In the array containing the E(x, y) values, we then choose the minimal value in the last row, let it be E(x 2, y 2), and follow the path of computation backwards, back to the row number 0. If the field we arrived at was E(0, y 1), then T[y 1 + 1] ... T[y 2] is a substring of T with the minimal edit distance to the pattern P.
The similarity of two strings and is determined by this formula: twice the number of matching characters divided by the total number of characters of both strings. The matching characters are defined as some longest common substring [3] plus recursively the number of matching characters in the non-matching regions on both sides of the longest common substring: [2] [4]
In information theory, the Hamming distance between two strings or vectors of equal length is the number of positions at which the corresponding symbols are different. In other words, it measures the minimum number of substitutions required to change one string into the other, or equivalently, the minimum number of errors that could have transformed one string into the other.
A simple and inefficient way to see where one string occurs inside another is to check at each index, one by one. First, we see if there is a copy of the needle starting at the first character of the haystack; if not, we look to see if there's a copy of the needle starting at the second character of the haystack, and so forth.
Longest common substring problem: find the longest string (or strings) that is a substring (or are substrings) of two or more strings; Substring search. Aho–Corasick string matching algorithm: trie based algorithm for finding all substring matches to any of a finite set of strings
String search, in O(m) complexity, where m is the length of the sub-string (but with initial O(n) time required to build the suffix tree for the string) Finding the longest repeated substring Finding the longest common substring