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Galaxy is extensible, as new command line tools can be integrated and shared within the Galaxy ToolShed. [25] An example of extending Galaxy is Galaxy-P from the University of Minnesota Supercomputing Institute, which is customized as a data analysis platform for mass spectrometry-based proteomics. [26]
An ultra-fast tool to find relative absent words in genomic data Nucleotide ACT (Artemis Comparison Tool) Synteny and comparative genomics Nucleotide AVID Pairwise global alignment with whole genomes: Nucleotide BLAT Alignment of cDNA sequences to a genome. Nucleotide DECIPHER: Alignment of rearranged genomes using 6 frame translation ...
tcpdump is a data-network packet analyzer computer program that runs under a command line interface. It allows the user to display TCP/IP and other packets being transmitted or received over a network to which the computer is attached. [3] Distributed under the BSD license, [4] tcpdump is free software.
The toolkit comprises user-friendly stand alone tools for quality control of the sequence data generated using Illumina and Roche 454 platforms with detailed results in the form of tables and graphs, and filtering of high-quality sequence data. It also includes few other tools, which are helpful in NGS data quality control and analysis.
Scientific workflow and data integration system Unix-like: Academic Free: Collaborative project GenePattern: Scientific workflow system that provides access to hundreds of genomic analysis tools Unix-like (public server); Linux, macOS, Windows: MIT: Broad Institute, UC San Diego: Geworkbench: Genomic data integration platform Linux, macOS, Windows
The Sleuth Kit can be used to examine most Microsoft Windows, most Apple Macintosh OSX, many Linux and some other UNIX computers. The Sleuth Kit can be used via the included command line tools, or as a library embedded within a separate digital forensic tool such as Autopsy or log2timeline/plaso.
In addition to the command-line netstat.exe tool that ships with Windows, GUI-based netstat programs are available. On the Windows platform, this command is available only if the Internet Protocol (TCP/IP) protocol is installed as a component in the properties of a network adapter in Network Connections.
Bioconductor is a free, open source and open development software project for the analysis and comprehension of genomic data generated by wet lab experiments in molecular biology. Bioconductor is based primarily on the statistical R programming language , but does contain contributions in other programming languages.