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In population genetics, the Watterson estimator is a method for describing the genetic diversity in a population. It was developed by Margaret Wu and G. A. Watterson in the 1970s. [1] [2] It is estimated by counting the number of polymorphic sites. It is a measure of the "population mutation rate" (the product of the effective population size ...
Mark and recapture is a method commonly used in ecology to estimate an animal population's size where it is impractical to count every individual. [1] A portion of the population is captured, marked, and released. Later, another portion will be captured and the number of marked individuals within the sample is counted.
Arlequin is a free population genetics software distributed as an integrated GUI data analysis software. [1] It performs several types of tests and calculations, including Fixation index (F st, also known as the "F-statistics" [2]), computing genetic distance, Hardy–Weinberg equilibrium, linkage disequilibrium, analysis of molecular variance, mismatch distribution, and pairwise difference tests.
PLINK [1] is a free, commonly used, open-source whole-genome association analysis toolset designed by Shaun Purcell. The software is designed flexibly to perform a wide range of basic, large-scale genetic analyses. PLINK currently supports following functionalities: data management;
Population viability analysis (PVA) is a species-specific method of risk assessment frequently used in conservation biology.It is traditionally defined as the process that determines the probability that a population will go extinct within a given number of years.
The Hardy–Weinberg law describes the relationship between allele and genotype frequencies when a population is not evolving. Let's examine the Hardy–Weinberg equation using the population of four-o'clock plants that we considered above: if the allele A frequency is denoted by the symbol p and the allele a frequency denoted by q, then p+q=1.
Fst values between European populations. The fixation index (F ST) is a measure of population differentiation due to genetic structure.It is frequently estimated from genetic polymorphism data, such as single-nucleotide polymorphisms (SNP) or microsatellites.
A description of each calculation, written in English, is generated and may be copied into the user's documents. Interactive help is available. The program provides methods that are appropriate for matched and independent t-tests, [ 2 ] survival analysis, [ 5 ] matched [ 6 ] and unmatched [ 7 ] [ 8 ] studies of dichotomous events, the Mantel ...