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  2. GeneMark - Wikipedia

    en.wikipedia.org/wiki/GeneMark

    The GeneMark.hmm algorithm (1998) was designed to improve accuracy of prediction of short genes and gene starts. The idea was to use the inhomogeneous Markov chain models introduced in GeneMark for computing likelihoods of the sequences emitted by the states of a hidden Markov model, or rather semi-Markov HMM, or generalized HMM describing the genomic sequence.

  3. List of gene prediction software - Wikipedia

    en.wikipedia.org/wiki/List_of_gene_prediction...

    Its name stands for Prokaryotic Dynamic Programming Genefinding Algorithm. It is based on log-likelihood functions and does not use Hidden or Interpolated Markov Models. Prokaryotes, Metagenomes (metaProdigal) [4] AUGUSTUS: Eukaryote gene predictor: Eukaryotes [5] BGF Hidden Markov model (HMM) and dynamic programming based ab initio gene ...

  4. Gene prediction - Wikipedia

    en.wikipedia.org/wiki/Gene_prediction

    Ab Initio gene prediction is an intrinsic method based on gene content and signal detection. Because of the inherent expense and difficulty in obtaining extrinsic evidence for many genes, it is also necessary to resort to ab initio gene finding, in which the genomic DNA sequence alone is systematically searched for certain tell-tale signs of protein-coding genes.

  5. General feature format - Wikipedia

    en.wikipedia.org/wiki/General_feature_format

    General GFF3 structure Position index Position name Description 1 seqid The name of the sequence where the feature is located. 2 source The algorithm or procedure that generated the feature.

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  7. MAFFT - Wikipedia

    en.wikipedia.org/wiki/MAFFT

    In bioinformatics, MAFFT (multiple alignment using fast Fourier transform) is a program used to create multiple sequence alignments of amino acid or nucleotide sequences. . Published in 2002, the first version used an algorithm based on progressive alignment, in which the sequences were clustered with the help of the fast Fourier transfo

  8. Create and manage an AOL Mail account - AOL Help

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    Go to the main AOL page.; Click Sign in in the upper right hand corner.; Click Create an account at the bottom of the screen.; Enter and submit the requested information.

  9. Ravens suspend WR Diontae Johnson for 1 game after he refused ...

    www.aol.com/sports/ravens-suspending-wr-diontae...

    The Baltimore Ravens have suspended wide receiver Diontae Johnson for one game due to “conduct detrimental to the team,” the team announced Wednesday afternoon.

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