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In population genetics, F-statistics (also known as fixation indices) describe the statistically expected level of heterozygosity in a population; more specifically the expected degree of (usually) a reduction in heterozygosity when compared to Hardy–Weinberg expectation.
It is usually associated with other statistical measures of population diversity, and is similar to expected heterozygosity. This statistic may be used to monitor diversity within or between ecological populations, to examine the genetic variation in crops and related species, [3] or to determine evolutionary relationships. [4]
Log-log plot of the total number of annotated proteins in genomes submitted to GenBank as a function of genome size. Based on data from NCBI genome reports.. Bacteria possess a compact genome architecture distinct from eukaryotes in two important ways: bacteria show a strong correlation between genome size and number of functional genes in a genome, and those genes are structured into operons.
Coalescent theory can also be used to model the amount of variation in DNA sequences expected from genetic drift and mutation. This value is termed the mean heterozygosity, represented as ¯. Mean heterozygosity is calculated as the probability of a mutation occurring at a given generation divided by the probability of any "event" at that ...
Tajima's D is a population genetic test statistic created by and named after the Japanese researcher Fumio Tajima. [1] Tajima's D is computed as the difference between two measures of genetic diversity: the mean number of pairwise differences and the number of segregating sites, each scaled so that they are expected to be the same in a neutrally evolving population of constant size.
Heterozygosity values of 51 worldwide human populations. [10] Sub-Saharan Africans have the highest values in the world. In population genetics, the concept of heterozygosity is commonly extended to refer to the population as a whole, i.e., the fraction of individuals in a population that are heterozygous for a particular locus. It can also ...
Fst values between European populations. The fixation index (F ST) is a measure of population differentiation due to genetic structure.It is frequently estimated from genetic polymorphism data, such as single-nucleotide polymorphisms (SNP) or microsatellites.
A method of visualizing k-mers, the k-mer spectrum, shows the multiplicity of each k-mer in a sequence versus the number of k-mers with that multiplicity. [6] The number of modes in a k-mer spectrum for a species's genome varies, with most species having a unimodal distribution. [7]