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Matplotlib (portmanteau of MATLAB, plot, and library [3]) is a plotting library for the Python programming language and its numerical mathematics extension NumPy.It provides an object-oriented API for embedding plots into applications using general-purpose GUI toolkits like Tkinter, wxPython, Qt, or GTK.
Hunter initially developed Matplotlib during his postdoctoral research in neurobiology to visualize electrocorticography (ECoG) data of epilepsy patients. [4] The open-source tool emerged as the most widely used plotting library for the Python programming language and a core component of the scientific Python stack, along with NumPy, SciPy and IPython. [6]
A snippet of Python code with keywords highlighted in bold yellow font. The syntax of the Python programming language is the set of rules that defines how a Python program will be written and interpreted (by both the runtime system and by human readers). The Python language has many similarities to Perl, C, and Java. However, there are some ...
Python's name is derived from the British comedy group Monty Python, whom Python creator Guido van Rossum enjoyed while developing the language. Monty Python references appear frequently in Python code and culture; [190] for example, the metasyntactic variables often used in Python literature are spam and eggs instead of the traditional foo and ...
The algorithm for computing a dot plot is closely related to kernel density estimation. The size chosen for the dots affects the appearance of the plot. Choice of dot size is equivalent to choosing the bandwidth for a kernel density estimate. In the R programming language this type of plot is also referred to as a stripchart [3] or stripplot. [4]
Numerical data may be encoded using dots, lines, or bars, to visually communicate a quantitative message. [22] Effective visualization helps users analyze and reason about data and evidence. [23] It makes complex data more accessible, understandable, and usable, but can also be reductive. [24]
Moreover, complementary Python packages are available; SciPy is a library that adds more MATLAB-like functionality and Matplotlib is a plotting package that provides MATLAB-like plotting functionality. Although matlab can perform sparse matrix operations, numpy alone cannot perform such operations and requires the use of the scipy.sparse library.
The main diagonal represents the sequence's alignment with itself; lines off the main diagonal represent similar or repetitive patterns within the sequence. In bioinformatics a dot plot is a graphical method for comparing two biological sequences and identifying regions of close similarity after sequence alignment. It is a type of recurrence plot.