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Several of the CPK colors refer mnemonically to colors of the pure elements or notable compound. For example, hydrogen is a colorless gas, carbon as charcoal, graphite or coke is black, sulfur powder is yellow, chlorine is a greenish gas, bromine is a dark red liquid, iodine in ether is violet, amorphous phosphorus is red, rust is dark orange-red, etc.
Repeating units will help to show how easy it is and clear it is to represent molecules through balls that represent atoms. The binary compounds sodium chloride (NaCl) and caesium chloride (CsCl) have cubic structures but have different space groups. This can be rationalised in terms of close packing of spheres of different sizes.
For simple structures, say <10 atoms, it is helpful to depict all atoms explicitly. For more complex molecules, most hydrogen atoms attached to carbon are omitted, and carbon atoms are represented by vertices. For ease of readability, sans-serif fonts are preferred. Many artists employ color to highlight parts of the molecules.
Similarly, color is due to the energy absorbed by the compound, when an electron transitions from the HOMO to the LUMO. Lycopene is a classic example of a compound with extensive conjugation (11 conjugated double bonds), giving rise to an intense red color (lycopene is responsible for the color of tomatoes).
S n groups with an odd value of n are identical to C nh groups of same n and are therefore not considered here (in particular, S 1 is identical to C s). The S 8 table reflects the 2007 discovery of errors in older references. [4] Specifically, (R x, R y) transform not as E 1 but rather as E 3.
Some common shapes of simple molecules include: Linear: In a linear model, atoms are connected in a straight line. The bond angles are set at 180°. For example, carbon dioxide and nitric oxide have a linear molecular shape. Trigonal planar: Molecules with the trigonal planar shape are somewhat triangular and in one plane (flat). Consequently ...
The individual atoms of the polypeptide have been hidden. All of the non-hydrogen atoms in the two ligands are shown near the top of the diagram. Ribbon diagrams are schematic representations of protein structure and are one of the most common methods of protein depiction used today. The ribbon shows the overall path and organization of the ...
Draw the structure in your molecule editor (ideally change the settings to give a molecule twice the size as the JACS standard or change the size to 200% before next step), and save it as an Encapsulated PostScript file (.eps) - many of the Apple print drivers (an Apple printer is not required) that print to a PostScript printer can be set to ...