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A bacterial DNA transposon. A transposable element (TE), also transposon, or jumping gene, is a type of mobile genetic element, a nucleic acid sequence in DNA that can change its position within a genome, sometimes creating or reversing mutations and altering the cell's genetic identity and genome size.
DNA transposons are DNA sequences, sometimes referred to "jumping genes", that can move and integrate to different locations within the genome. [1] They are class II transposable elements (TEs) that move through a DNA intermediate, as opposed to class I TEs, retrotransposons , that move through an RNA intermediate. [ 2 ]
DNA transposons, LTR retrotransposons, SINEs, and LINEs make up a majority of the human genome. Mobile genetic elements (MGEs), sometimes called selfish genetic elements, [1] are a type of genetic material that can move around within a genome, or that can be transferred from one species or replicon to another. MGEs are found in all organisms.
In STM, specially tagged transposons are inserted into an organism, such as a bacterium, and randomly integrated into the host genome. In theory, the modified mutant organism should express the altered gene, thus altering the phenotype. If a new phenotype is observed, the genome is sequenced and searched for tagged transposons. [3]
CRISPR-associated transposons or CASTs are mobile genetic elements that have evolved to make use of minimal CRISPR systems for RNA-guided transposition of their DNA. [1] Unlike traditional CRISPR systems that contain interference mechanisms to degrade targeted DNA, CASTs lack proteins and/or protein domains responsible for DNA cleavage. [ 2 ]
The Sleeping Beauty (SB) transposase is the recombinase that drives the Sleeping Beauty transposon system. [9] SB transposase belongs to the DD[E/D] family of transposases, which in turn belong to a large superfamily of polynucleotidyl transferases that includes RNase H, RuvC Holliday resolvase, RAG proteins, and retroviral integrases.
Therefore, genome-wide analysis is feasible if transposons are positioned throughout the genome in a mutant collection. [ 5 ] Transposon sequencing requires the creation of a transposon insertion library, which will contain a group of mutants that collectively have transposon insertions in all non-essential genes.
Microbial genetics is a subject area within microbiology and genetic engineering. Microbial genetics studies microorganisms for different purposes. The microorganisms that are observed are bacteria and archaea. Some fungi and protozoa are also subjects used to study in this field.