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  2. Project Jupyter - Wikipedia

    en.wikipedia.org/wiki/Project_Jupyter

    A Jupyter Notebook document is a JSON file, following a versioned schema, usually ending with the ".ipynb" extension. The main parts of the Jupyter Notebooks are: Metadata, Notebook format and list of cells. Metadata is a data Dictionary of definitions to set up and display the notebook. Notebook Format is a version number of the software.

  3. Read–eval–print loop - Wikipedia

    en.wikipedia.org/wiki/Read–eval–print_loop

    The read–eval–print loop involves the programmer more frequently than the classic edit–compile–run–debug cycle. Because the print function outputs in the same textual format that the read function uses for input, most results are printed in a form that could be copied and pasted back into the REPL. However, it is sometimes necessary ...

  4. Literate programming - Wikipedia

    en.wikipedia.org/wiki/Literate_programming

    Literate Programming by Donald Knuth is the seminal book on literate programming.. Literate programming is a programming paradigm introduced in 1984 by Donald Knuth in which a computer program is given as an explanation of how it works in a natural language, such as English, interspersed (embedded) with snippets of macros and traditional source code, from which compilable source code can be ...

  5. List of programming languages for artificial intelligence

    en.wikipedia.org/wiki/List_of_programming...

    Jupyter Notebooks can execute cells of Python code, retaining the context between the execution of cells, which usually facilitates interactive data exploration. [5] Elixir is a high-level functional programming language based on the Erlang VM. Its machine-learning ecosystem includes Nx for computing on CPUs and GPUs, Bumblebee and Axon for ...

  6. Cython - Wikipedia

    en.wikipedia.org/wiki/Cython

    Cython is written in Python and C and works on Windows, macOS, and Linux, producing C source files compatible with CPython 2.6, 2.7, and 3.3 and later versions. The Cython source code that Cython compiles (to C) can use both Python 2 and Python 3 syntax, defaulting to Python 2 syntax in Cython 0.x and Python 3 syntax in Cython 3.x.

  7. List of RNA-Seq bioinformatics tools - Wikipedia

    en.wikipedia.org/wiki/List_of_RNA-Seq...

    fastqp Simple FASTQ quality assessment using Python. Kraken: [9] A set of tools for quality control and analysis of high-throughput sequence data. HTSeq [10] The Python script htseq-qa takes a file with sequencing reads (either raw or aligned reads) and produces a PDF file with useful plots to assess the technical quality of a run.

  8. R (programming language) - Wikipedia

    en.wikipedia.org/wiki/R_(programming_language)

    R is a programming language for statistical computing and data visualization.It has been adopted in the fields of data mining, bioinformatics and data analysis. [9]The core R language is augmented by a large number of extension packages, containing reusable code, documentation, and sample data.

  9. Julia (programming language) - Wikipedia

    en.wikipedia.org/wiki/Julia_(programming_language)

    The REPL gives user access to the system shell and to help mode, by pressing ; or ? after the prompt (preceding each command), respectively. It also keeps the history of commands, including between sessions. [98] Code can be tested inside Julia's interactive session or saved into a file with a .jl extension and run from the command line by ...