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  2. Biological database - Wikipedia

    en.wikipedia.org/wiki/Biological_database

    The Database Issue of NAR is freely available, and categorizes many of the public biological databases. A companion database to the issue called the Online Molecular Biology Database Collection lists 1,380 online databases. [15] Other collections of databases exist such as MetaBase and the Bioinformatics Links Collection. [16] [17]

  3. List of biological databases - Wikipedia

    en.wikipedia.org/wiki/List_of_biological_databases

    database of protein similarities computed using FASTA: Protein model databases Swiss-model: server and repository for protein structure models Protein model databases AAindex: database of amino acid indices, amino acid mutation matrices, and pair-wise contact potentials Protein model databases BioGRID: Samuel Lunenfeld Research Institute

  4. Bioinformatics - Wikipedia

    en.wikipedia.org/wiki/Bioinformatics

    The main advantage are that end users do not have to deal with software and database maintenance overheads. Basic bioinformatics services are classified by the EBI into three categories: SSS (Sequence Search Services), MSA (Multiple Sequence Alignment), and BSA (Biological Sequence Analysis). [ 62 ]

  5. List of open-source bioinformatics software - Wikipedia

    en.wikipedia.org/wiki/List_of_open-source...

    Software platform, allows organizations to integrate, analyze, and share complex biomedical data Linux, macOS, Windows: Apache: LabKey Software Foundation LAMMPS: Molecular dynamics program written in C++: Linux, macOS, Windows: Apache: Sandia National Laboratories. mothur: Software for analysis of 16S rRNA gene amplicon sequence data Linux ...

  6. National Center for Biotechnology Information - Wikipedia

    en.wikipedia.org/wiki/National_Center_for...

    NCBI had responsibility for making available the GenBank DNA sequence database since 1992. [4] GenBank coordinates with individual laboratories and other sequence databases, such as those of the European Molecular Biology Laboratory (EMBL) and the DNA Data Bank of Japan (DDBJ).

  7. Taxonomic database - Wikipedia

    en.wikipedia.org/wiki/Taxonomic_database

    Taxonomic databases digitize scientific biodiversity data and provide access to taxonomic data for research. [1] Taxonomic databases vary in breadth of the groups of taxa and geographical space they seek to include, for example: beetles in a defined region, mammals globally, or all described taxa in the tree of life. [2]

  8. List of biodiversity databases - Wikipedia

    en.wikipedia.org/wiki/List_of_biodiversity_databases

    This is a list of biodiversity databases.Biodiversity databases store taxonomic information alone or more commonly also other information like distribution (spatial) data and ecological data, which provide information on the biodiversity of a particular area or group of living organisms.

  9. Biocuration - Wikipedia

    en.wikipedia.org/wiki/Biocuration

    Articles about biocuration on PubMed per year since the first mention in 2006 up to the end of 2022.. A biocurator is a professional scientist who curates, collects, annotates, and validates information that is disseminated by biological and model organism databases.