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A volcano plot is constructed by plotting the negative logarithm of the p value on the y axis (usually base 10). This results in data points with low p values (highly significant) appearing toward the top of the plot. The x axis is the logarithm of the fold change between the two conditions. The logarithm of the fold change is used so that ...
A point P has coordinates (x, y) with respect to the original system and coordinates (x′, y′) with respect to the new system. [1] In the new coordinate system, the point P will appear to have been rotated in the opposite direction, that is, clockwise through the angle . A rotation of axes in more than two dimensions is defined similarly.
Dimensions in the data are often displayed on axes. If a horizontal and a vertical axis are used, they are usually referred to as the x-axis and y-axis. Each axis will have a scale, denoted by periodic graduations and usually accompanied by numerical or categorical indications. Each axis will typically also have a label displayed outside or ...
For example, weight and height would be on the y-axis, and height would be on the x-axis. Correlations may be positive (rising), negative (falling), or null (uncorrelated). If the dots' pattern slopes from lower left to upper right, it indicates a positive correlation between the variables being studied. If the pattern of dots slopes from upper ...
The rank abundance curve visually depicts both species richness and species evenness. Species richness can be viewed as the number of different species on the chart i.e., how many species were ranked. Species evenness is reflected in the slope of the line that fits the graph (assuming a linear, i.e. logarithmic series, relationship).
A log–log plot of y = x (blue), y = x 2 (green), and y = x 3 (red). Note the logarithmic scale markings on each of the axes, and that the log x and log y axes (where the logarithms are 0) are where x and y themselves are 1. Comparison of linear, concave, and convex functions when plotted using a linear scale (left) or a log scale (right).
The top left graph is linear in the X- and Y-axes, and the Y-axis ranges from 0 to 10. A base-10 log scale is used for the Y-axis of the bottom left graph, and the Y-axis ranges from 0.1 to 1000. The top right graph uses a log-10 scale for just the X-axis, and the bottom right graph uses a log-10 scale for both the X axis and the Y-axis.
To explore more relationships, axes may be reordered or restructured. One approach arranges axes in 3-dimensional space (still in parallel, forming a Lattice graph), an axis can have more than two neighbors in a circle around the central attribute, and the arrangement problem can be improve by using a minimum spanning tree. [11]